Strain Fitness in Agrobacterium fabrum C58 around Atu0339
Experiment: Hygromycin B 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Hygromycin B 12.5 ug/mL |
---|---|---|---|---|---|
remove | |||||
329,530 | + | Atu0337 | 0.38 | +0.9 | |
329,530 | + | Atu0337 | 0.38 | -0.4 | |
329,530 | + | Atu0337 | 0.38 | +0.2 | |
329,538 | - | Atu0337 | 0.39 | -0.4 | |
329,577 | - | Atu0337 | 0.43 | -0.8 | |
329,612 | + | Atu0337 | 0.47 | -0.3 | |
329,681 | + | Atu0337 | 0.54 | +0.5 | |
329,688 | + | Atu0337 | 0.55 | +2.1 | |
329,718 | + | Atu0337 | 0.58 | +0.3 | |
329,718 | + | Atu0337 | 0.58 | -0.4 | |
329,725 | + | Atu0337 | 0.59 | +0.5 | |
329,772 | + | Atu0337 | 0.64 | +0.1 | |
329,925 | + | Atu0337 | 0.80 | +0.5 | |
329,985 | + | Atu0337 | 0.86 | +0.2 | |
330,052 | - | -0.3 | |||
330,428 | - | -0.7 | |||
330,475 | - | -0.5 | |||
330,635 | - | Atu0339 | 0.38 | +0.5 | |
330,649 | - | Atu0339 | 0.42 | -0.8 | |
330,701 | - | Atu0339 | 0.57 | -1.0 | |
330,728 | + | Atu0339 | 0.64 | -0.3 | |
330,736 | - | Atu0339 | 0.67 | +2.2 | |
330,839 | + | +0.1 | |||
330,884 | - | -0.3 |
Or see this region's nucleotide sequence