Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3605 and Atu3606 are separated by 201 nucleotides Atu3606 and Atu3607 overlap by 8 nucleotides Atu3607 and Atu3608 are separated by 113 nucleotides Atu3608 and Atu3609 are separated by 114 nucleotides
Atu3605: Atu3605 - hypothetical protein, at 660,589 to 661,260
Atu3605
Atu3606: Atu3606 - cell division ATP-binding protein, at 661,462 to 662,121
Atu3606
Atu3607: Atu3607 - cell division protein, at 662,114 to 663,121
Atu3607
Atu3608: Atu3608 - hypothetical protein, at 663,235 to 663,966
Atu3608
Atu3609: Atu3609 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 664,081 to 664,878
Atu3609
Position (kb)
662
663
664 Strain fitness (log2 ratio)
-2
-1
0
1 at 661.187 kb on + strand, within Atu3605 at 661.250 kb on + strand at 661.351 kb on - strand at 661.423 kb on - strand at 661.459 kb on + strand at 663.267 kb on - strand at 663.340 kb on - strand, within Atu3608 at 663.340 kb on - strand, within Atu3608 at 663.445 kb on + strand, within Atu3608 at 663.470 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.505 kb on - strand, within Atu3608 at 663.529 kb on + strand, within Atu3608 at 663.579 kb on - strand, within Atu3608 at 663.833 kb on + strand, within Atu3608 at 663.912 kb on + strand at 663.920 kb on - strand at 663.923 kb on + strand at 664.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 661,187 + Atu3605 0.89 +1.3 661,250 + -0.7 661,351 - -0.7 661,423 - +1.1 661,459 + +0.5 663,267 - +0.7 663,340 - Atu3608 0.14 -1.4 663,340 - Atu3608 0.14 -0.3 663,445 + Atu3608 0.29 -1.1 663,470 + Atu3608 0.32 -1.4 663,492 + Atu3608 0.35 -1.9 663,492 + Atu3608 0.35 +1.7 663,505 - Atu3608 0.37 -1.5 663,529 + Atu3608 0.40 -2.7 663,579 - Atu3608 0.47 -0.3 663,833 + Atu3608 0.82 +0.7 663,912 + +1.4 663,920 - +1.2 663,923 + -1.0 664,011 + +1.3
Or see this region's nucleotide sequence