Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3501 and Atu3502 are separated by 5 nucleotides Atu3502 and Atu3503 are separated by 3 nucleotides Atu3503 and Atu3504 are separated by 61 nucleotides
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1 at 552.954 kb on + strand, within Atu3502 at 553.016 kb on - strand, within Atu3502 at 553.024 kb on + strand, within Atu3502 at 553.090 kb on + strand, within Atu3502 at 553.103 kb on - strand, within Atu3502 at 553.108 kb on + strand, within Atu3502 at 553.108 kb on - strand, within Atu3502 at 553.190 kb on - strand, within Atu3502 at 553.211 kb on + strand, within Atu3502 at 553.367 kb on - strand, within Atu3502 at 553.410 kb on - strand, within Atu3502 at 553.481 kb on - strand, within Atu3502 at 553.506 kb on - strand, within Atu3502 at 553.563 kb on + strand, within Atu3502 at 553.571 kb on + strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.623 kb on + strand, within Atu3502 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand at 553.866 kb on - strand, within Atu3503 at 553.976 kb on + strand, within Atu3503 at 554.140 kb on - strand, within Atu3503 at 554.154 kb on - strand, within Atu3503 at 554.157 kb on - strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.320 kb on - strand, within Atu3503 at 554.341 kb on + strand, within Atu3503 at 554.443 kb on - strand, within Atu3503 at 554.457 kb on - strand, within Atu3503 at 554.504 kb on + strand at 554.504 kb on + strand at 554.512 kb on - strand at 554.512 kb on - strand at 554.532 kb on + strand at 554.740 kb on - strand, within Atu3504 at 554.819 kb on + strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.913 kb on + strand, within Atu3504 at 554.931 kb on - strand, within Atu3504 at 554.933 kb on - strand, within Atu3504 at 554.990 kb on + strand, within Atu3504 at 555.028 kb on + strand, within Atu3504 at 555.034 kb on - strand, within Atu3504 at 555.060 kb on - strand, within Atu3504 at 555.131 kb on + strand, within Atu3504 at 555.163 kb on - strand, within Atu3504 at 555.176 kb on - strand, within Atu3504 at 555.239 kb on + strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.278 kb on + strand, within Atu3504 at 555.332 kb on + strand, within Atu3504 at 555.369 kb on + strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.442 kb on - strand, within Atu3504 at 555.466 kb on - strand, within Atu3504 at 555.492 kb on - strand, within Atu3504 at 555.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 552,954 + Atu3502 0.13 -1.2 553,016 - Atu3502 0.20 +1.4 553,024 + Atu3502 0.21 -0.7 553,090 + Atu3502 0.28 -0.8 553,103 - Atu3502 0.30 -2.0 553,108 + Atu3502 0.30 -0.5 553,108 - Atu3502 0.30 -0.9 553,190 - Atu3502 0.39 +1.0 553,211 + Atu3502 0.42 -1.4 553,367 - Atu3502 0.59 +0.1 553,410 - Atu3502 0.64 -0.3 553,481 - Atu3502 0.72 -0.8 553,506 - Atu3502 0.75 -0.8 553,563 + Atu3502 0.81 +0.0 553,571 + Atu3502 0.82 -0.5 553,579 - Atu3502 0.83 -1.3 553,579 - Atu3502 0.83 +0.0 553,623 + Atu3502 0.88 +0.3 553,707 - +0.8 553,742 + -0.4 553,744 + +0.4 553,752 - +0.2 553,752 - +0.7 553,866 - Atu3503 0.16 -0.5 553,976 + Atu3503 0.29 +0.3 554,140 - Atu3503 0.49 -1.7 554,154 - Atu3503 0.51 -0.7 554,157 - Atu3503 0.51 -0.9 554,159 + Atu3503 0.51 -0.7 554,159 + Atu3503 0.51 -1.0 554,320 - Atu3503 0.71 -0.4 554,341 + Atu3503 0.73 -1.7 554,443 - Atu3503 0.85 -0.6 554,457 - Atu3503 0.87 -0.4 554,504 + +0.3 554,504 + +0.6 554,512 - -0.0 554,512 - -0.2 554,532 + +0.0 554,740 - Atu3504 0.12 +0.2 554,819 + Atu3504 0.20 -0.3 554,827 - Atu3504 0.20 -0.8 554,827 - Atu3504 0.20 +0.1 554,913 + Atu3504 0.29 +0.0 554,931 - Atu3504 0.31 -1.2 554,933 - Atu3504 0.31 -0.3 554,990 + Atu3504 0.37 +0.1 555,028 + Atu3504 0.41 -0.1 555,034 - Atu3504 0.41 +1.4 555,060 - Atu3504 0.44 -0.0 555,131 + Atu3504 0.51 -1.4 555,163 - Atu3504 0.54 -0.6 555,176 - Atu3504 0.56 +1.0 555,239 + Atu3504 0.62 -0.1 555,247 - Atu3504 0.63 +1.6 555,247 - Atu3504 0.63 -0.7 555,278 + Atu3504 0.66 +0.8 555,332 + Atu3504 0.72 +0.0 555,369 + Atu3504 0.75 -0.0 555,377 - Atu3504 0.76 -0.4 555,377 - Atu3504 0.76 -0.2 555,377 - Atu3504 0.76 +0.0 555,377 - Atu3504 0.76 +0.8 555,377 - Atu3504 0.76 +0.0 555,442 - Atu3504 0.83 +0.3 555,466 - Atu3504 0.85 +0.5 555,492 - Atu3504 0.88 -0.9 555,547 - +0.6
Or see this region's nucleotide sequence