Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3332 and Atu3333 are separated by 239 nucleotides Atu3333 and Atu3334 overlap by 4 nucleotides Atu3334 and Atu3335 are separated by 246 nucleotides
Atu3332: Atu3332 - hypothetical protein, at 367,331 to 368,317
Atu3332
Atu3333: Atu3333 - 3-ketoacyl-ACP reductase, at 368,557 to 369,342
Atu3333
Atu3334: Atu3334 - hypothetical protein, at 369,339 to 369,572
Atu3334
Atu3335: Atu3335 - 3-methyladenine DNA glycosylase, at 369,819 to 370,400
Atu3335
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 367.639 kb on - strand, within Atu3332 at 367.701 kb on + strand, within Atu3332 at 367.787 kb on - strand, within Atu3332 at 367.787 kb on - strand, within Atu3332 at 367.792 kb on - strand, within Atu3332 at 367.793 kb on - strand, within Atu3332 at 367.793 kb on - strand, within Atu3332 at 367.877 kb on + strand, within Atu3332 at 367.920 kb on + strand, within Atu3332 at 367.958 kb on - strand, within Atu3332 at 367.994 kb on + strand, within Atu3332 at 368.094 kb on + strand, within Atu3332 at 368.094 kb on + strand, within Atu3332 at 368.102 kb on - strand, within Atu3332 at 368.137 kb on + strand, within Atu3332 at 368.145 kb on - strand, within Atu3332 at 368.173 kb on + strand, within Atu3332 at 368.190 kb on + strand, within Atu3332 at 368.215 kb on - strand, within Atu3332 at 368.289 kb on - strand at 368.435 kb on - strand at 368.488 kb on - strand at 368.491 kb on + strand at 368.517 kb on + strand at 368.530 kb on + strand at 368.817 kb on + strand, within Atu3333 at 368.858 kb on - strand, within Atu3333 at 368.880 kb on + strand, within Atu3333 at 368.889 kb on + strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.897 kb on - strand, within Atu3333 at 368.922 kb on + strand, within Atu3333 at 368.961 kb on + strand, within Atu3333 at 368.976 kb on - strand, within Atu3333 at 369.021 kb on + strand, within Atu3333 at 369.078 kb on + strand, within Atu3333 at 369.138 kb on - strand, within Atu3333 at 369.267 kb on + strand at 369.267 kb on + strand at 369.307 kb on + strand at 369.362 kb on + strand at 369.382 kb on - strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.445 kb on + strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.453 kb on - strand, within Atu3334 at 369.466 kb on + strand, within Atu3334 at 369.480 kb on + strand, within Atu3334 at 369.636 kb on + strand at 369.644 kb on - strand at 369.820 kb on - strand at 369.853 kb on - strand at 369.876 kb on + strand at 369.950 kb on + strand, within Atu3335 at 370.011 kb on + strand, within Atu3335 at 370.014 kb on - strand, within Atu3335 at 370.031 kb on + strand, within Atu3335 at 370.066 kb on - strand, within Atu3335 at 370.204 kb on - strand, within Atu3335 at 370.226 kb on + strand, within Atu3335 at 370.229 kb on + strand, within Atu3335 at 370.236 kb on + strand, within Atu3335 at 370.279 kb on - strand, within Atu3335 at 370.297 kb on - strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.328 kb on + strand, within Atu3335 at 370.336 kb on - strand, within Atu3335
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 367,639 - Atu3332 0.31 -2.0 367,701 + Atu3332 0.37 +1.0 367,787 - Atu3332 0.46 +1.0 367,787 - Atu3332 0.46 -0.4 367,792 - Atu3332 0.47 +0.3 367,793 - Atu3332 0.47 +0.0 367,793 - Atu3332 0.47 -0.3 367,877 + Atu3332 0.55 +2.4 367,920 + Atu3332 0.60 -0.4 367,958 - Atu3332 0.64 -1.2 367,994 + Atu3332 0.67 -0.3 368,094 + Atu3332 0.77 -0.2 368,094 + Atu3332 0.77 +1.5 368,102 - Atu3332 0.78 -0.9 368,137 + Atu3332 0.82 -0.5 368,145 - Atu3332 0.82 -0.9 368,173 + Atu3332 0.85 +3.9 368,190 + Atu3332 0.87 +0.0 368,215 - Atu3332 0.90 -0.1 368,289 - -0.3 368,435 - +0.0 368,488 - -0.2 368,491 + +0.0 368,517 + +0.3 368,530 + -0.0 368,817 + Atu3333 0.33 +0.4 368,858 - Atu3333 0.38 -1.0 368,880 + Atu3333 0.41 +0.0 368,889 + Atu3333 0.42 -1.0 368,897 - Atu3333 0.43 +0.3 368,897 - Atu3333 0.43 -0.9 368,897 - Atu3333 0.43 -0.9 368,922 + Atu3333 0.46 -0.0 368,961 + Atu3333 0.51 -0.8 368,976 - Atu3333 0.53 +0.2 369,021 + Atu3333 0.59 -0.8 369,078 + Atu3333 0.66 +2.6 369,138 - Atu3333 0.74 +0.4 369,267 + -0.4 369,267 + +0.5 369,307 + -1.5 369,362 + +0.1 369,382 - Atu3334 0.18 +0.4 369,445 + Atu3334 0.45 +0.0 369,445 + Atu3334 0.45 +0.6 369,445 + Atu3334 0.45 -1.0 369,453 - Atu3334 0.49 -0.0 369,453 - Atu3334 0.49 +1.6 369,466 + Atu3334 0.54 -1.0 369,480 + Atu3334 0.60 +0.1 369,636 + +0.0 369,644 - +0.3 369,820 - -1.2 369,853 - +1.0 369,876 + -0.2 369,950 + Atu3335 0.23 +0.7 370,011 + Atu3335 0.33 -1.7 370,014 - Atu3335 0.34 -1.5 370,031 + Atu3335 0.36 +0.3 370,066 - Atu3335 0.42 +0.0 370,204 - Atu3335 0.66 +1.0 370,226 + Atu3335 0.70 -1.5 370,229 + Atu3335 0.70 -1.0 370,236 + Atu3335 0.72 -0.3 370,279 - Atu3335 0.79 -0.1 370,297 - Atu3335 0.82 +1.0 370,328 + Atu3335 0.87 +0.1 370,328 + Atu3335 0.87 +0.2 370,336 - Atu3335 0.89 +0.1
Or see this region's nucleotide sequence