Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0341 and Atu0342 overlap by 1 nucleotides Atu0342 and Atu0343 are separated by 55 nucleotides Atu0343 and Atu0344 are separated by 94 nucleotides
Atu0341: Atu0341 - rRNA methylase, at 332,078 to 332,938
Atu0341
Atu0342: Atu0342 - lipoprotein signal peptidase, at 332,938 to 333,426
Atu0342
Atu0343: Atu0343 - two component sensor kinase/response regulator hybrid, at 333,482 to 335,722
Atu0343
Atu0344: Atu0344 - hypothetical protein, at 335,817 to 336,698
Atu0344
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.893 kb on + strand at 333.450 kb on + strand at 333.475 kb on + strand at 333.564 kb on - strand at 333.670 kb on + strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.684 kb on - strand at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.721 kb on + strand, within Atu0343 at 333.729 kb on - strand, within Atu0343 at 333.766 kb on - strand, within Atu0343 at 333.947 kb on + strand, within Atu0343 at 333.955 kb on - strand, within Atu0343 at 333.986 kb on + strand, within Atu0343 at 333.995 kb on + strand, within Atu0343 at 334.007 kb on + strand, within Atu0343 at 334.009 kb on + strand, within Atu0343 at 334.023 kb on - strand, within Atu0343 at 334.136 kb on - strand, within Atu0343 at 334.182 kb on - strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.308 kb on + strand, within Atu0343 at 334.316 kb on - strand, within Atu0343 at 334.389 kb on + strand, within Atu0343 at 334.451 kb on - strand, within Atu0343 at 334.527 kb on + strand, within Atu0343 at 334.535 kb on - strand, within Atu0343 at 334.538 kb on + strand, within Atu0343 at 334.544 kb on + strand, within Atu0343 at 334.636 kb on - strand, within Atu0343 at 334.638 kb on + strand, within Atu0343 at 334.696 kb on + strand, within Atu0343 at 334.742 kb on - strand, within Atu0343 at 334.809 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.811 kb on + strand, within Atu0343 at 334.814 kb on - strand, within Atu0343 at 334.819 kb on - strand, within Atu0343 at 334.819 kb on - strand, within Atu0343 at 334.824 kb on + strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.895 kb on - strand, within Atu0343 at 334.902 kb on + strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.020 kb on + strand, within Atu0343 at 335.040 kb on + strand, within Atu0343 at 335.084 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.124 kb on - strand, within Atu0343 at 335.135 kb on + strand, within Atu0343 at 335.143 kb on - strand, within Atu0343 at 335.145 kb on + strand, within Atu0343 at 335.197 kb on - strand, within Atu0343 at 335.233 kb on + strand, within Atu0343 at 335.255 kb on + strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.296 kb on - strand, within Atu0343 at 335.307 kb on + strand, within Atu0343 at 335.433 kb on + strand, within Atu0343 at 335.639 kb on + strand at 335.647 kb on - strand at 335.679 kb on - strand at 335.706 kb on - strand at 335.706 kb on - strand at 335.884 kb on - strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.987 kb on + strand, within Atu0344 at 336.030 kb on + strand, within Atu0344 at 336.182 kb on - strand, within Atu0344 at 336.243 kb on - strand, within Atu0344 at 336.388 kb on - strand, within Atu0344 at 336.455 kb on - strand, within Atu0344 at 336.500 kb on + strand, within Atu0344 at 336.517 kb on - strand, within Atu0344 at 336.546 kb on + strand, within Atu0344
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 332,893 + +1.0 333,450 + -1.2 333,475 + +0.1 333,564 - +0.4 333,670 + +0.4 333,684 - +0.1 333,684 - -1.5 333,684 - +1.1 333,721 + Atu0343 0.11 +0.1 333,721 + Atu0343 0.11 +0.7 333,721 + Atu0343 0.11 -0.1 333,729 - Atu0343 0.11 -0.7 333,766 - Atu0343 0.13 -0.9 333,947 + Atu0343 0.21 +2.3 333,955 - Atu0343 0.21 +0.2 333,986 + Atu0343 0.22 +0.8 333,995 + Atu0343 0.23 +1.2 334,007 + Atu0343 0.23 -0.3 334,009 + Atu0343 0.24 +1.0 334,023 - Atu0343 0.24 +0.9 334,136 - Atu0343 0.29 -0.1 334,182 - Atu0343 0.31 -1.5 334,308 + Atu0343 0.37 +0.0 334,308 + Atu0343 0.37 +0.4 334,316 - Atu0343 0.37 +0.2 334,389 + Atu0343 0.40 +0.1 334,451 - Atu0343 0.43 +0.7 334,527 + Atu0343 0.47 +0.4 334,535 - Atu0343 0.47 +0.6 334,538 + Atu0343 0.47 +0.2 334,544 + Atu0343 0.47 +1.7 334,636 - Atu0343 0.51 +1.1 334,638 + Atu0343 0.52 -0.3 334,696 + Atu0343 0.54 +0.2 334,742 - Atu0343 0.56 +0.3 334,809 + Atu0343 0.59 +0.1 334,811 + Atu0343 0.59 +1.2 334,811 + Atu0343 0.59 -0.0 334,811 + Atu0343 0.59 +0.9 334,814 - Atu0343 0.59 +0.3 334,819 - Atu0343 0.60 -0.5 334,819 - Atu0343 0.60 +1.3 334,824 + Atu0343 0.60 -0.9 334,824 - Atu0343 0.60 +1.3 334,824 - Atu0343 0.60 +1.6 334,895 - Atu0343 0.63 +0.9 334,902 + Atu0343 0.63 +0.8 335,011 - Atu0343 0.68 +0.2 335,011 - Atu0343 0.68 -0.6 335,020 + Atu0343 0.69 +0.3 335,040 + Atu0343 0.70 +0.7 335,084 + Atu0343 0.71 -0.3 335,086 + Atu0343 0.72 +0.1 335,086 + Atu0343 0.72 -0.3 335,094 - Atu0343 0.72 -0.9 335,094 - Atu0343 0.72 +0.6 335,124 - Atu0343 0.73 -1.8 335,135 + Atu0343 0.74 -0.2 335,143 - Atu0343 0.74 +0.2 335,145 + Atu0343 0.74 +0.8 335,197 - Atu0343 0.77 +0.5 335,233 + Atu0343 0.78 +0.7 335,255 + Atu0343 0.79 +0.6 335,258 - Atu0343 0.79 +0.5 335,258 - Atu0343 0.79 +0.7 335,258 - Atu0343 0.79 +0.1 335,258 - Atu0343 0.79 +0.3 335,296 - Atu0343 0.81 +0.8 335,307 + Atu0343 0.81 +0.5 335,433 + Atu0343 0.87 -0.1 335,639 + +0.2 335,647 - +0.0 335,679 - -0.1 335,706 - +1.3 335,706 - -0.2 335,884 - -0.6 335,886 + +0.1 335,886 + -0.8 335,886 + -1.9 335,886 + -1.4 335,886 + +0.7 335,894 - -0.4 335,894 - -0.3 335,894 - -1.6 335,894 - +0.7 335,987 + Atu0344 0.19 -0.3 336,030 + Atu0344 0.24 -1.1 336,182 - Atu0344 0.41 +0.7 336,243 - Atu0344 0.48 +0.1 336,388 - Atu0344 0.65 -0.3 336,455 - Atu0344 0.72 -2.4 336,500 + Atu0344 0.77 +0.7 336,517 - Atu0344 0.79 -0.3 336,546 + Atu0344 0.83 -1.3
Or see this region's nucleotide sequence