Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0216 and Atu0217 are separated by 9 nucleotides Atu0217 and Atu0218 are separated by 14 nucleotides
Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888
Atu0216
Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902
Atu0217
Atu0218: Atu0218 - component of type IV pilus, at 222,917 to 224,392
Atu0218
Position (kb) 221
222
223 Strain fitness (log2 ratio) -1
0
1
2
3 at 220.908 kb on - strand at 220.908 kb on - strand at 221.059 kb on + strand, within Atu0216 at 221.059 kb on + strand, within Atu0216 at 221.086 kb on + strand, within Atu0216 at 221.101 kb on + strand, within Atu0216 at 221.125 kb on - strand, within Atu0216 at 221.181 kb on + strand, within Atu0216 at 221.310 kb on - strand, within Atu0216 at 221.312 kb on + strand, within Atu0216 at 221.318 kb on + strand, within Atu0216 at 221.335 kb on - strand, within Atu0216 at 221.788 kb on + strand, within Atu0216 at 221.826 kb on + strand at 221.999 kb on + strand, within Atu0217 at 222.054 kb on - strand, within Atu0217 at 222.108 kb on - strand, within Atu0217 at 222.115 kb on - strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.245 kb on - strand, within Atu0217 at 222.360 kb on + strand, within Atu0217 at 222.398 kb on + strand, within Atu0217 at 222.474 kb on - strand, within Atu0217 at 222.485 kb on - strand, within Atu0217 at 222.496 kb on + strand, within Atu0217 at 222.504 kb on - strand, within Atu0217 at 222.524 kb on + strand, within Atu0217 at 222.532 kb on - strand, within Atu0217 at 222.545 kb on + strand, within Atu0217 at 222.595 kb on + strand, within Atu0217 at 222.703 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.784 kb on + strand, within Atu0217 at 222.846 kb on - strand at 222.853 kb on + strand at 222.904 kb on - strand at 222.977 kb on - strand at 222.977 kb on - strand at 223.015 kb on - strand at 223.018 kb on + strand at 223.021 kb on - strand at 223.035 kb on + strand at 223.043 kb on - strand at 223.043 kb on - strand at 223.086 kb on - strand, within Atu0218 at 223.125 kb on - strand, within Atu0218 at 223.129 kb on + strand, within Atu0218 at 223.172 kb on - strand, within Atu0218 at 223.181 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.209 kb on + strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.217 kb on - strand, within Atu0218 at 223.258 kb on + strand, within Atu0218 at 223.265 kb on - strand, within Atu0218 at 223.284 kb on - strand, within Atu0218 at 223.315 kb on - strand, within Atu0218 at 223.334 kb on - strand, within Atu0218 at 223.459 kb on + strand, within Atu0218 at 223.467 kb on - strand, within Atu0218 at 223.505 kb on + strand, within Atu0218 at 223.507 kb on + strand, within Atu0218 at 223.562 kb on - strand, within Atu0218 at 223.720 kb on + strand, within Atu0218 at 223.728 kb on - strand, within Atu0218 at 223.747 kb on + strand, within Atu0218 at 223.764 kb on - strand, within Atu0218 at 223.780 kb on + strand, within Atu0218 at 223.826 kb on - strand, within Atu0218 at 223.859 kb on - strand, within Atu0218
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 220,908 - +0.5 220,908 - -1.0 221,059 + Atu0216 0.16 -0.8 221,059 + Atu0216 0.16 +0.0 221,086 + Atu0216 0.19 -0.9 221,101 + Atu0216 0.20 -0.3 221,125 - Atu0216 0.23 -0.4 221,181 + Atu0216 0.28 -0.6 221,310 - Atu0216 0.41 -0.6 221,312 + Atu0216 0.42 +0.1 221,318 + Atu0216 0.42 +0.7 221,335 - Atu0216 0.44 -0.3 221,788 + Atu0216 0.90 -0.4 221,826 + -1.1 221,999 + Atu0217 0.10 -0.4 222,054 - Atu0217 0.16 +0.2 222,108 - Atu0217 0.21 -0.2 222,115 - Atu0217 0.22 -0.4 222,149 + Atu0217 0.25 +3.3 222,149 + Atu0217 0.25 -1.4 222,245 - Atu0217 0.35 -0.6 222,360 + Atu0217 0.46 -0.6 222,398 + Atu0217 0.50 -0.8 222,474 - Atu0217 0.57 +1.0 222,485 - Atu0217 0.58 -1.1 222,496 + Atu0217 0.60 -1.4 222,504 - Atu0217 0.60 +0.6 222,524 + Atu0217 0.62 +0.1 222,532 - Atu0217 0.63 +1.7 222,545 + Atu0217 0.64 +1.4 222,595 + Atu0217 0.69 +0.1 222,703 + Atu0217 0.80 +0.8 222,745 + Atu0217 0.84 -1.2 222,745 + Atu0217 0.84 -0.3 222,784 + Atu0217 0.88 -0.8 222,846 - +1.1 222,853 + +0.1 222,904 - -0.2 222,977 - +0.1 222,977 - -0.4 223,015 - +0.4 223,018 + +0.4 223,021 - -0.1 223,035 + -0.1 223,043 - -0.3 223,043 - +0.4 223,086 - Atu0218 0.11 -0.3 223,125 - Atu0218 0.14 -0.6 223,129 + Atu0218 0.14 -0.2 223,172 - Atu0218 0.17 -1.6 223,181 + Atu0218 0.18 -0.5 223,209 + Atu0218 0.20 -0.6 223,209 + Atu0218 0.20 +0.0 223,217 - Atu0218 0.20 -0.5 223,217 - Atu0218 0.20 +0.5 223,258 + Atu0218 0.23 -0.8 223,265 - Atu0218 0.24 -1.5 223,284 - Atu0218 0.25 -0.3 223,315 - Atu0218 0.27 -0.4 223,334 - Atu0218 0.28 +1.7 223,459 + Atu0218 0.37 -0.1 223,467 - Atu0218 0.37 +0.1 223,505 + Atu0218 0.40 -1.1 223,507 + Atu0218 0.40 +0.1 223,562 - Atu0218 0.44 +0.7 223,720 + Atu0218 0.54 +0.5 223,728 - Atu0218 0.55 -0.3 223,747 + Atu0218 0.56 +1.4 223,764 - Atu0218 0.57 -0.9 223,780 + Atu0218 0.58 -0.4 223,826 - Atu0218 0.62 +1.4 223,859 - Atu0218 0.64 -0.4
Or see this region's nucleotide sequence