Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6021 and Atu6022 are separated by 607 nucleotides Atu6022 and Atu6023 are separated by 3 nucleotides
Atu6021: Atu6021 - D-nopaline dehydrogenase, at 29,978 to 31,096
Atu6021
Atu6022: Atu6022 - N-methylhydantoinase A/acetone carboxylase, beta subunit, at 31,704 to 33,740
Atu6022
Atu6023: Atu6023 - N-methylhydantoinase B/acetone carboxylase, alpha subunit, at 33,744 to 35,699
Atu6023
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 30.798 kb on + strand, within Atu6021 at 30.888 kb on + strand, within Atu6021 at 30.891 kb on - strand, within Atu6021 at 30.918 kb on - strand, within Atu6021 at 30.930 kb on + strand, within Atu6021 at 30.930 kb on + strand, within Atu6021 at 30.935 kb on + strand, within Atu6021 at 30.938 kb on - strand, within Atu6021 at 30.942 kb on + strand, within Atu6021 at 30.942 kb on + strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.960 kb on - strand, within Atu6021 at 30.982 kb on - strand, within Atu6021 at 31.033 kb on - strand at 31.060 kb on - strand at 31.062 kb on - strand at 31.085 kb on + strand at 31.132 kb on + strand at 31.154 kb on + strand at 31.182 kb on + strand at 31.200 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.241 kb on + strand at 31.274 kb on + strand at 31.282 kb on - strand at 31.282 kb on - strand at 31.323 kb on - strand at 31.352 kb on + strand at 31.359 kb on - strand at 31.359 kb on - strand at 31.359 kb on - strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.463 kb on + strand at 31.486 kb on + strand at 31.506 kb on + strand at 31.510 kb on + strand at 31.511 kb on + strand at 31.518 kb on - strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.730 kb on - strand at 31.757 kb on + strand at 31.757 kb on + strand at 31.757 kb on + strand at 31.769 kb on + strand at 31.777 kb on - strand at 31.793 kb on + strand at 31.793 kb on + strand at 31.795 kb on - strand at 31.803 kb on + strand at 31.899 kb on + strand at 31.905 kb on - strand at 31.905 kb on - strand at 31.907 kb on - strand at 31.918 kb on + strand, within Atu6022 at 31.969 kb on + strand, within Atu6022 at 31.972 kb on - strand, within Atu6022 at 31.979 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.011 kb on + strand, within Atu6022 at 32.018 kb on - strand, within Atu6022 at 32.018 kb on - strand, within Atu6022 at 32.028 kb on + strand, within Atu6022 at 32.068 kb on + strand, within Atu6022 at 32.076 kb on - strand, within Atu6022 at 32.078 kb on - strand, within Atu6022 at 32.094 kb on + strand, within Atu6022 at 32.127 kb on + strand, within Atu6022 at 32.128 kb on - strand, within Atu6022 at 32.194 kb on - strand, within Atu6022 at 32.195 kb on - strand, within Atu6022 at 32.263 kb on + strand, within Atu6022 at 32.271 kb on - strand, within Atu6022 at 32.335 kb on - strand, within Atu6022 at 32.353 kb on - strand, within Atu6022 at 32.368 kb on - strand, within Atu6022 at 32.373 kb on + strand, within Atu6022 at 32.373 kb on + strand, within Atu6022 at 32.420 kb on - strand, within Atu6022 at 32.426 kb on + strand, within Atu6022 at 32.432 kb on - strand, within Atu6022 at 32.462 kb on + strand, within Atu6022 at 32.481 kb on + strand, within Atu6022 at 32.481 kb on - strand, within Atu6022 at 32.489 kb on - strand, within Atu6022 at 32.561 kb on + strand, within Atu6022 at 32.562 kb on + strand, within Atu6022 at 32.578 kb on + strand, within Atu6022 at 32.593 kb on - strand, within Atu6022 at 32.610 kb on + strand, within Atu6022 at 32.618 kb on - strand, within Atu6022 at 32.650 kb on - strand, within Atu6022 at 32.676 kb on - strand, within Atu6022 at 32.738 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.851 kb on + strand, within Atu6022 at 32.859 kb on - strand, within Atu6022 at 32.916 kb on - strand, within Atu6022 at 32.919 kb on + strand, within Atu6022 at 32.919 kb on + strand, within Atu6022 at 32.927 kb on - strand, within Atu6022 at 32.960 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.987 kb on - strand, within Atu6022 at 33.018 kb on + strand, within Atu6022 at 33.027 kb on - strand, within Atu6022 at 33.060 kb on + strand, within Atu6022 at 33.102 kb on - strand, within Atu6022 at 33.114 kb on - strand, within Atu6022 at 33.114 kb on - strand, within Atu6022 at 33.140 kb on - strand, within Atu6022 at 33.158 kb on - strand, within Atu6022 at 33.217 kb on + strand, within Atu6022 at 33.267 kb on + strand, within Atu6022 at 33.309 kb on + strand, within Atu6022 at 33.327 kb on - strand, within Atu6022 at 33.331 kb on + strand, within Atu6022 at 33.411 kb on + strand, within Atu6022 at 33.432 kb on + strand, within Atu6022 at 33.478 kb on - strand, within Atu6022 at 33.487 kb on + strand, within Atu6022 at 33.501 kb on + strand, within Atu6022 at 33.509 kb on - strand, within Atu6022 at 33.517 kb on - strand, within Atu6022 at 33.591 kb on - strand at 33.597 kb on - strand at 33.715 kb on + strand at 33.723 kb on - strand at 33.729 kb on + strand at 33.739 kb on + strand at 33.815 kb on + strand at 33.863 kb on - strand at 33.908 kb on - strand at 33.918 kb on - strand at 33.956 kb on + strand, within Atu6023 at 33.976 kb on + strand, within Atu6023 at 33.977 kb on + strand, within Atu6023 at 34.038 kb on + strand, within Atu6023 at 34.048 kb on + strand, within Atu6023 at 34.048 kb on + strand, within Atu6023 at 34.051 kb on - strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.147 kb on + strand, within Atu6023 at 34.160 kb on - strand, within Atu6023 at 34.208 kb on + strand, within Atu6023 at 34.229 kb on - strand, within Atu6023 at 34.277 kb on + strand, within Atu6023 at 34.308 kb on + strand, within Atu6023 at 34.318 kb on + strand, within Atu6023 at 34.389 kb on + strand, within Atu6023 at 34.397 kb on - strand, within Atu6023 at 34.424 kb on + strand, within Atu6023 at 34.424 kb on + strand, within Atu6023 at 34.432 kb on - strand, within Atu6023 at 34.434 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.483 kb on - strand, within Atu6023 at 34.518 kb on + strand, within Atu6023 at 34.524 kb on - strand, within Atu6023 at 34.576 kb on + strand, within Atu6023 at 34.584 kb on - strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.612 kb on + strand, within Atu6023 at 34.615 kb on - strand, within Atu6023 at 34.615 kb on - strand, within Atu6023 at 34.617 kb on + strand, within Atu6023 at 34.620 kb on - strand, within Atu6023 at 34.620 kb on - strand, within Atu6023 at 34.626 kb on + strand, within Atu6023 at 34.633 kb on + strand, within Atu6023 at 34.633 kb on + strand, within Atu6023 at 34.641 kb on - strand, within Atu6023 at 34.641 kb on - strand, within Atu6023 at 34.679 kb on + strand, within Atu6023 at 34.696 kb on + strand, within Atu6023 at 34.704 kb on - strand, within Atu6023 at 34.724 kb on - strand, within Atu6023 at 34.736 kb on - strand, within Atu6023
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 30,798 + Atu6021 0.73 -0.2 30,888 + Atu6021 0.81 +1.1 30,891 - Atu6021 0.82 -0.5 30,918 - Atu6021 0.84 +0.2 30,930 + Atu6021 0.85 -0.1 30,930 + Atu6021 0.85 -1.0 30,935 + Atu6021 0.86 -0.1 30,938 - Atu6021 0.86 +0.2 30,942 + Atu6021 0.86 +0.5 30,942 + Atu6021 0.86 +0.3 30,950 - Atu6021 0.87 -0.8 30,950 - Atu6021 0.87 +4.5 30,950 - Atu6021 0.87 -0.4 30,950 - Atu6021 0.87 -0.4 30,960 - Atu6021 0.88 -0.4 30,982 - Atu6021 0.90 -0.5 31,033 - -0.0 31,060 - +0.1 31,062 - +3.6 31,085 + +1.1 31,132 + +0.1 31,154 + +0.1 31,182 + +0.6 31,200 + +0.6 31,202 + +0.1 31,202 + +0.1 31,202 + +1.0 31,202 + +0.6 31,210 - -1.2 31,210 - +1.6 31,210 - -0.1 31,210 - -0.3 31,210 - -0.1 31,241 + -0.3 31,274 + -0.2 31,282 - -0.3 31,282 - -0.6 31,323 - -0.3 31,352 + -0.3 31,359 - +0.1 31,359 - +0.9 31,359 - -0.4 31,429 + +0.3 31,429 + +0.6 31,429 + +0.1 31,429 + -0.9 31,429 + -0.3 31,437 - -0.8 31,437 - -0.6 31,437 - -0.4 31,437 - +0.6 31,437 - -1.0 31,437 - -0.3 31,437 - -0.1 31,437 - -0.8 31,463 + -0.5 31,486 + +0.6 31,506 + +0.4 31,510 + +0.5 31,511 + +1.0 31,518 - +0.2 31,642 + -0.2 31,642 + -0.2 31,642 + +0.0 31,642 + +1.4 31,642 + +0.3 31,642 + +0.0 31,650 - -0.3 31,650 - -0.5 31,650 - -0.3 31,650 - -0.2 31,650 - -0.4 31,730 - -0.8 31,757 + +0.4 31,757 + +0.0 31,757 + -0.1 31,769 + +0.7 31,777 - +0.6 31,793 + -0.9 31,793 + -1.3 31,795 - -0.2 31,803 + -0.4 31,899 + -0.3 31,905 - +0.4 31,905 - -0.2 31,907 - -1.0 31,918 + Atu6022 0.11 -0.4 31,969 + Atu6022 0.13 +0.5 31,972 - Atu6022 0.13 -0.4 31,979 + Atu6022 0.14 +1.1 32,010 + Atu6022 0.15 +1.4 32,010 + Atu6022 0.15 +0.5 32,010 + Atu6022 0.15 +0.4 32,011 + Atu6022 0.15 +0.4 32,018 - Atu6022 0.15 +0.7 32,018 - Atu6022 0.15 +1.6 32,028 + Atu6022 0.16 +1.0 32,068 + Atu6022 0.18 -0.6 32,076 - Atu6022 0.18 +0.1 32,078 - Atu6022 0.18 +0.9 32,094 + Atu6022 0.19 +0.2 32,127 + Atu6022 0.21 -0.7 32,128 - Atu6022 0.21 -0.1 32,194 - Atu6022 0.24 +0.3 32,195 - Atu6022 0.24 +0.8 32,263 + Atu6022 0.27 +0.2 32,271 - Atu6022 0.28 +0.1 32,335 - Atu6022 0.31 +0.0 32,353 - Atu6022 0.32 +0.3 32,368 - Atu6022 0.33 -0.4 32,373 + Atu6022 0.33 +1.1 32,373 + Atu6022 0.33 +0.2 32,420 - Atu6022 0.35 -0.4 32,426 + Atu6022 0.35 +0.6 32,432 - Atu6022 0.36 -0.5 32,462 + Atu6022 0.37 +1.0 32,481 + Atu6022 0.38 +0.0 32,481 - Atu6022 0.38 -0.2 32,489 - Atu6022 0.39 +0.3 32,561 + Atu6022 0.42 -0.0 32,562 + Atu6022 0.42 +0.1 32,578 + Atu6022 0.43 -0.1 32,593 - Atu6022 0.44 +0.2 32,610 + Atu6022 0.44 -0.4 32,618 - Atu6022 0.45 -0.5 32,650 - Atu6022 0.46 -0.3 32,676 - Atu6022 0.48 +0.6 32,738 + Atu6022 0.51 -0.4 32,743 + Atu6022 0.51 -1.5 32,743 + Atu6022 0.51 -0.3 32,743 + Atu6022 0.51 -0.0 32,743 + Atu6022 0.51 -2.8 32,743 + Atu6022 0.51 +0.2 32,743 + Atu6022 0.51 -2.1 32,743 + Atu6022 0.51 +1.1 32,743 + Atu6022 0.51 -0.1 32,750 + Atu6022 0.51 -0.1 32,750 + Atu6022 0.51 +0.6 32,750 + Atu6022 0.51 -0.0 32,750 + Atu6022 0.51 -0.4 32,750 + Atu6022 0.51 +1.1 32,750 + Atu6022 0.51 -0.9 32,750 + Atu6022 0.51 -0.4 32,750 + Atu6022 0.51 -1.6 32,750 + Atu6022 0.51 +0.8 32,750 + Atu6022 0.51 -1.0 32,750 + Atu6022 0.51 +0.9 32,750 + Atu6022 0.51 -0.4 32,750 + Atu6022 0.51 -0.9 32,750 + Atu6022 0.51 +0.6 32,750 + Atu6022 0.51 +0.1 32,751 - Atu6022 0.51 +0.7 32,751 - Atu6022 0.51 +1.2 32,751 - Atu6022 0.51 +0.7 32,751 - Atu6022 0.51 +0.1 32,751 - Atu6022 0.51 +0.0 32,758 - Atu6022 0.52 -1.9 32,758 - Atu6022 0.52 +0.3 32,758 - Atu6022 0.52 -0.3 32,758 - Atu6022 0.52 +0.8 32,758 - Atu6022 0.52 +0.4 32,758 - Atu6022 0.52 +1.6 32,758 - Atu6022 0.52 +0.3 32,758 - Atu6022 0.52 -0.5 32,758 - Atu6022 0.52 +0.6 32,758 - Atu6022 0.52 +0.3 32,851 + Atu6022 0.56 +0.5 32,859 - Atu6022 0.57 +0.2 32,916 - Atu6022 0.59 +0.0 32,919 + Atu6022 0.60 -0.6 32,919 + Atu6022 0.60 +1.6 32,927 - Atu6022 0.60 -0.3 32,960 + Atu6022 0.62 -0.5 32,979 + Atu6022 0.63 -1.0 32,979 + Atu6022 0.63 -0.1 32,979 + Atu6022 0.63 -0.0 32,979 + Atu6022 0.63 +0.2 32,979 + Atu6022 0.63 +0.7 32,979 + Atu6022 0.63 +0.8 32,987 - Atu6022 0.63 +1.1 33,018 + Atu6022 0.65 +0.4 33,027 - Atu6022 0.65 +0.5 33,060 + Atu6022 0.67 +0.2 33,102 - Atu6022 0.69 +0.8 33,114 - Atu6022 0.69 +0.9 33,114 - Atu6022 0.69 +0.2 33,140 - Atu6022 0.70 +0.1 33,158 - Atu6022 0.71 +0.0 33,217 + Atu6022 0.74 +0.1 33,267 + Atu6022 0.77 +0.3 33,309 + Atu6022 0.79 +1.6 33,327 - Atu6022 0.80 -0.4 33,331 + Atu6022 0.80 +0.3 33,411 + Atu6022 0.84 +1.0 33,432 + Atu6022 0.85 +1.0 33,478 - Atu6022 0.87 +0.3 33,487 + Atu6022 0.88 +0.2 33,501 + Atu6022 0.88 -0.2 33,509 - Atu6022 0.89 +0.0 33,517 - Atu6022 0.89 +1.6 33,591 - -0.4 33,597 - +1.1 33,715 + +0.7 33,723 - +0.3 33,729 + -0.2 33,739 + +0.2 33,815 + +0.5 33,863 - -0.4 33,908 - +0.5 33,918 - +0.1 33,956 + Atu6023 0.11 -0.3 33,976 + Atu6023 0.12 +0.1 33,977 + Atu6023 0.12 +0.4 34,038 + Atu6023 0.15 -0.4 34,048 + Atu6023 0.16 -0.4 34,048 + Atu6023 0.16 +0.4 34,051 - Atu6023 0.16 +0.8 34,058 + Atu6023 0.16 +0.4 34,058 + Atu6023 0.16 +0.6 34,058 + Atu6023 0.16 -0.2 34,147 + Atu6023 0.21 +0.4 34,160 - Atu6023 0.21 -0.4 34,208 + Atu6023 0.24 -0.3 34,229 - Atu6023 0.25 -0.2 34,277 + Atu6023 0.27 +0.8 34,308 + Atu6023 0.29 +1.6 34,318 + Atu6023 0.29 -0.4 34,389 + Atu6023 0.33 +0.2 34,397 - Atu6023 0.33 -0.4 34,424 + Atu6023 0.35 -0.1 34,424 + Atu6023 0.35 -0.2 34,432 - Atu6023 0.35 -0.0 34,434 + Atu6023 0.35 +0.7 34,446 + Atu6023 0.36 -0.0 34,446 + Atu6023 0.36 -0.6 34,446 + Atu6023 0.36 +0.7 34,446 + Atu6023 0.36 +0.9 34,446 + Atu6023 0.36 -0.8 34,454 - Atu6023 0.36 -0.3 34,454 - Atu6023 0.36 -0.4 34,454 - Atu6023 0.36 +0.2 34,454 - Atu6023 0.36 +0.8 34,465 + Atu6023 0.37 +0.3 34,465 + Atu6023 0.37 -0.2 34,465 + Atu6023 0.37 -2.6 34,465 + Atu6023 0.37 -0.6 34,465 + Atu6023 0.37 -0.4 34,473 - Atu6023 0.37 -1.9 34,473 - Atu6023 0.37 -0.0 34,473 - Atu6023 0.37 -0.4 34,473 - Atu6023 0.37 +0.0 34,483 - Atu6023 0.38 +0.1 34,518 + Atu6023 0.40 +0.5 34,524 - Atu6023 0.40 -0.6 34,576 + Atu6023 0.43 +0.4 34,584 - Atu6023 0.43 -1.1 34,607 + Atu6023 0.44 +0.1 34,607 + Atu6023 0.44 +0.6 34,607 + Atu6023 0.44 -0.1 34,612 + Atu6023 0.44 -0.4 34,615 - Atu6023 0.45 +0.2 34,615 - Atu6023 0.45 -0.1 34,617 + Atu6023 0.45 +0.7 34,620 - Atu6023 0.45 -0.4 34,620 - Atu6023 0.45 -0.4 34,626 + Atu6023 0.45 -0.5 34,633 + Atu6023 0.45 +2.0 34,633 + Atu6023 0.45 -0.1 34,641 - Atu6023 0.46 +0.1 34,641 - Atu6023 0.46 +0.2 34,679 + Atu6023 0.48 -0.2 34,696 + Atu6023 0.49 +0.2 34,704 - Atu6023 0.49 +0.1 34,724 - Atu6023 0.50 +0.3 34,736 - Atu6023 0.51 -0.4
Or see this region's nucleotide sequence