Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5165 and Atu5166 overlap by 1 nucleotides Atu5166 and Atu5167 are separated by 234 nucleotides
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906
Atu5166
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Position (kb) 164
165 Strain fitness (log2 ratio) -1
0
1
2 at 163.253 kb on - strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.284 kb on + strand, within Atu5165 at 163.374 kb on + strand, within Atu5165 at 163.390 kb on - strand, within Atu5165 at 163.472 kb on + strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.613 kb on + strand, within Atu5165 at 163.621 kb on - strand, within Atu5165 at 163.631 kb on + strand, within Atu5165 at 163.675 kb on + strand, within Atu5165 at 163.678 kb on + strand, within Atu5165 at 163.690 kb on + strand, within Atu5165 at 163.802 kb on - strand, within Atu5165 at 163.861 kb on + strand, within Atu5165 at 163.909 kb on - strand, within Atu5165 at 164.038 kb on + strand at 164.125 kb on - strand at 164.156 kb on - strand at 164.171 kb on + strand at 164.237 kb on + strand at 164.245 kb on - strand at 164.249 kb on + strand at 164.321 kb on + strand, within Atu5166 at 164.339 kb on + strand, within Atu5166 at 164.439 kb on + strand, within Atu5166 at 164.664 kb on + strand, within Atu5166 at 164.672 kb on - strand, within Atu5166 at 164.735 kb on - strand, within Atu5166 at 164.807 kb on + strand, within Atu5166 at 164.826 kb on + strand, within Atu5166 at 164.903 kb on + strand at 164.903 kb on + strand at 164.915 kb on - strand at 164.946 kb on - strand at 164.970 kb on + strand at 165.090 kb on + strand at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand at 165.253 kb on + strand, within Atu5167 at 165.272 kb on + strand, within Atu5167 at 165.273 kb on + strand, within Atu5167 at 165.323 kb on - strand, within Atu5167 at 165.482 kb on - strand, within Atu5167 at 165.498 kb on + strand, within Atu5167 at 165.714 kb on - strand, within Atu5167 at 165.755 kb on + strand, within Atu5167 at 165.876 kb on + strand, within Atu5167
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 163,253 - Atu5165 0.58 +1.8 163,253 - Atu5165 0.58 +1.4 163,284 + Atu5165 0.59 +1.0 163,374 + Atu5165 0.63 +0.4 163,390 - Atu5165 0.64 +0.6 163,472 + Atu5165 0.68 +1.3 163,551 - Atu5165 0.71 +0.2 163,551 - Atu5165 0.71 +1.1 163,613 + Atu5165 0.74 +0.6 163,621 - Atu5165 0.74 +0.9 163,631 + Atu5165 0.75 -0.5 163,675 + Atu5165 0.77 +1.0 163,678 + Atu5165 0.77 +0.9 163,690 + Atu5165 0.77 +0.5 163,802 - Atu5165 0.82 +0.1 163,861 + Atu5165 0.85 +0.6 163,909 - Atu5165 0.87 +1.0 164,038 + +0.8 164,125 - +1.0 164,156 - +0.9 164,171 + +1.1 164,237 + +1.2 164,245 - +1.0 164,249 + +0.5 164,321 + Atu5166 0.16 +0.9 164,339 + Atu5166 0.19 +0.1 164,439 + Atu5166 0.33 +0.6 164,664 + Atu5166 0.65 +0.8 164,672 - Atu5166 0.66 +0.7 164,735 - Atu5166 0.75 +1.2 164,807 + Atu5166 0.86 +0.4 164,826 + Atu5166 0.88 +0.1 164,903 + +0.5 164,903 + +1.0 164,915 - -0.2 164,946 - +1.2 164,970 + +0.3 165,090 + +0.4 165,122 + -0.7 165,150 + +0.5 165,173 + +0.5 165,253 + Atu5167 0.12 +0.4 165,272 + Atu5167 0.14 +0.2 165,273 + Atu5167 0.14 +0.8 165,323 - Atu5167 0.19 +0.5 165,482 - Atu5167 0.36 +1.1 165,498 + Atu5167 0.38 +0.2 165,714 - Atu5167 0.61 +0.2 165,755 + Atu5167 0.66 +0.4 165,876 + Atu5167 0.79 -1.1
Or see this region's nucleotide sequence