Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5162 and Atu5163 overlap by 4 nucleotides Atu5163 and Atu5164 are separated by 2 nucleotides Atu5164 and Atu5165 are separated by 100 nucleotides Atu5165 and Atu5166 overlap by 1 nucleotides Atu5166 and Atu5167 are separated by 234 nucleotides
Atu5162: Atu5162 - type IV secretion protein AvhB1, at 160,508 to 161,194
Atu5162
Atu5163: Atu5163 - type IV secretion protein AvhB2, at 161,191 to 161,490
Atu5163
Atu5164: Atu5164 - type IV secretion protein AvhB3, at 161,493 to 161,834
Atu5164
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906
Atu5166
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Position (kb) 161
162
163
164
165 Strain fitness (log2 ratio) -1
0
1
2
3 at 160.968 kb on - strand, within Atu5162 at 161.128 kb on - strand at 161.129 kb on + strand at 161.208 kb on + strand at 161.399 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.404 kb on + strand, within Atu5163 at 161.412 kb on - strand, within Atu5163 at 161.484 kb on + strand at 161.618 kb on - strand, within Atu5164 at 161.843 kb on + strand at 161.924 kb on + strand at 161.980 kb on - strand at 162.077 kb on + strand at 162.077 kb on + strand at 162.085 kb on - strand at 162.280 kb on - strand, within Atu5165 at 162.344 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.392 kb on + strand, within Atu5165 at 162.417 kb on - strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.607 kb on + strand, within Atu5165 at 162.615 kb on - strand, within Atu5165 at 162.842 kb on - strand, within Atu5165 at 162.858 kb on + strand, within Atu5165 at 162.876 kb on - strand, within Atu5165 at 162.978 kb on - strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.068 kb on + strand, within Atu5165 at 163.092 kb on + strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.253 kb on - strand, within Atu5165 at 163.284 kb on + strand, within Atu5165 at 163.374 kb on + strand, within Atu5165 at 163.390 kb on - strand, within Atu5165 at 163.472 kb on + strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.551 kb on - strand, within Atu5165 at 163.613 kb on + strand, within Atu5165 at 163.621 kb on - strand, within Atu5165 at 163.631 kb on + strand, within Atu5165 at 163.675 kb on + strand, within Atu5165 at 163.678 kb on + strand, within Atu5165 at 163.690 kb on + strand, within Atu5165 at 163.802 kb on - strand, within Atu5165 at 163.861 kb on + strand, within Atu5165 at 163.909 kb on - strand, within Atu5165 at 164.038 kb on + strand at 164.125 kb on - strand at 164.156 kb on - strand at 164.171 kb on + strand at 164.237 kb on + strand at 164.245 kb on - strand at 164.249 kb on + strand at 164.321 kb on + strand, within Atu5166 at 164.339 kb on + strand, within Atu5166 at 164.439 kb on + strand, within Atu5166 at 164.664 kb on + strand, within Atu5166 at 164.672 kb on - strand, within Atu5166 at 164.735 kb on - strand, within Atu5166 at 164.807 kb on + strand, within Atu5166 at 164.826 kb on + strand, within Atu5166 at 164.903 kb on + strand at 164.903 kb on + strand at 164.915 kb on - strand at 164.946 kb on - strand at 164.970 kb on + strand at 165.090 kb on + strand at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 160,968 - Atu5162 0.67 +1.0 161,128 - -1.2 161,129 + +0.3 161,208 + +0.9 161,399 + Atu5163 0.69 -1.5 161,404 + Atu5163 0.71 +0.5 161,404 + Atu5163 0.71 +0.2 161,412 - Atu5163 0.74 +0.3 161,484 + +0.8 161,618 - Atu5164 0.37 +0.6 161,843 + +0.2 161,924 + +0.5 161,980 - -0.3 162,077 + +0.9 162,077 + +0.5 162,085 - +0.8 162,280 - Atu5165 0.15 +0.5 162,344 + Atu5165 0.18 +0.9 162,392 + Atu5165 0.20 +0.9 162,392 + Atu5165 0.20 +1.0 162,417 - Atu5165 0.21 +1.5 162,607 + Atu5165 0.30 +0.7 162,607 + Atu5165 0.30 +0.5 162,607 + Atu5165 0.30 +1.4 162,615 - Atu5165 0.30 +0.3 162,842 - Atu5165 0.40 +1.0 162,858 + Atu5165 0.41 +1.1 162,876 - Atu5165 0.41 +0.7 162,978 - Atu5165 0.46 +1.2 163,068 + Atu5165 0.50 +0.8 163,068 + Atu5165 0.50 +0.7 163,068 + Atu5165 0.50 +3.5 163,068 + Atu5165 0.50 +1.0 163,068 + Atu5165 0.50 +0.5 163,068 + Atu5165 0.50 +0.7 163,092 + Atu5165 0.51 +0.7 163,253 - Atu5165 0.58 +1.8 163,253 - Atu5165 0.58 +1.4 163,284 + Atu5165 0.59 +1.0 163,374 + Atu5165 0.63 +0.4 163,390 - Atu5165 0.64 +0.6 163,472 + Atu5165 0.68 +1.3 163,551 - Atu5165 0.71 +0.2 163,551 - Atu5165 0.71 +1.1 163,613 + Atu5165 0.74 +0.6 163,621 - Atu5165 0.74 +0.9 163,631 + Atu5165 0.75 -0.5 163,675 + Atu5165 0.77 +1.0 163,678 + Atu5165 0.77 +0.9 163,690 + Atu5165 0.77 +0.5 163,802 - Atu5165 0.82 +0.1 163,861 + Atu5165 0.85 +0.6 163,909 - Atu5165 0.87 +1.0 164,038 + +0.8 164,125 - +1.0 164,156 - +0.9 164,171 + +1.1 164,237 + +1.2 164,245 - +1.0 164,249 + +0.5 164,321 + Atu5166 0.16 +0.9 164,339 + Atu5166 0.19 +0.1 164,439 + Atu5166 0.33 +0.6 164,664 + Atu5166 0.65 +0.8 164,672 - Atu5166 0.66 +0.7 164,735 - Atu5166 0.75 +1.2 164,807 + Atu5166 0.86 +0.4 164,826 + Atu5166 0.88 +0.1 164,903 + +0.5 164,903 + +1.0 164,915 - -0.2 164,946 - +1.2 164,970 + +0.3 165,090 + +0.4 165,122 + -0.7 165,150 + +0.5 165,173 + +0.5
Or see this region's nucleotide sequence