Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3493 and Atu3494 are separated by 317 nucleotides Atu3494 and Atu3495 are separated by 161 nucleotides
Atu3493: Atu3493 - non-heme haloperoxidase, at 543,958 to 544,794
Atu3493
Atu3494: Atu3494 - hypothetical protein, at 545,112 to 545,807
Atu3494
Atu3495: Atu3495 - diguanylate cyclase, at 545,969 to 547,903
Atu3495
Position (kb) 545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 544.150 kb on - strand, within Atu3493 at 544.193 kb on - strand, within Atu3493 at 544.203 kb on - strand, within Atu3493 at 544.240 kb on + strand, within Atu3493 at 544.391 kb on + strand, within Atu3493 at 544.583 kb on - strand, within Atu3493 at 544.649 kb on - strand, within Atu3493 at 544.759 kb on + strand at 544.829 kb on + strand at 544.970 kb on + strand at 544.985 kb on - strand at 545.117 kb on - strand at 545.197 kb on + strand, within Atu3494 at 545.220 kb on - strand, within Atu3494 at 545.256 kb on - strand, within Atu3494 at 545.361 kb on - strand, within Atu3494 at 545.422 kb on + strand, within Atu3494 at 545.427 kb on + strand, within Atu3494 at 545.435 kb on - strand, within Atu3494 at 545.473 kb on + strand, within Atu3494 at 545.489 kb on + strand, within Atu3494 at 545.675 kb on + strand, within Atu3494 at 545.738 kb on + strand at 545.749 kb on + strand at 545.777 kb on + strand at 546.076 kb on - strand at 546.203 kb on - strand, within Atu3495 at 546.203 kb on - strand, within Atu3495 at 546.243 kb on - strand, within Atu3495 at 546.410 kb on - strand, within Atu3495 at 546.415 kb on + strand, within Atu3495 at 546.415 kb on + strand, within Atu3495
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 544,150 - Atu3493 0.23 +0.4 544,193 - Atu3493 0.28 +0.2 544,203 - Atu3493 0.29 -2.0 544,240 + Atu3493 0.34 -0.5 544,391 + Atu3493 0.52 -0.6 544,583 - Atu3493 0.75 -0.1 544,649 - Atu3493 0.83 +0.4 544,759 + +0.2 544,829 + -1.1 544,970 + -0.2 544,985 - +0.8 545,117 - -0.8 545,197 + Atu3494 0.12 +0.2 545,220 - Atu3494 0.16 -0.7 545,256 - Atu3494 0.21 -0.2 545,361 - Atu3494 0.36 -1.1 545,422 + Atu3494 0.45 -1.2 545,427 + Atu3494 0.45 -1.5 545,435 - Atu3494 0.46 +0.0 545,473 + Atu3494 0.52 -0.6 545,489 + Atu3494 0.54 -1.7 545,675 + Atu3494 0.81 -0.8 545,738 + -0.3 545,749 + -2.4 545,777 + -0.3 546,076 - -1.4 546,203 - Atu3495 0.12 +0.2 546,203 - Atu3495 0.12 -0.6 546,243 - Atu3495 0.14 -1.3 546,410 - Atu3495 0.23 -1.3 546,415 + Atu3495 0.23 -1.1 546,415 + Atu3495 0.23 -1.8
Or see this region's nucleotide sequence