Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3282 and Atu3283 are separated by 159 nucleotides Atu3283 and Atu3284 are separated by 4 nucleotides Atu3284 and Atu3285 are separated by 11 nucleotides
Atu3282: Atu3282 - sugar ABC transporter substrate-binding protein, at 307,348 to 308,598
Atu3282
Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684
Atu3283
Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546
Atu3284
Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552
Atu3285
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.790 kb on + strand, within Atu3282 at 307.803 kb on - strand, within Atu3282 at 307.840 kb on + strand, within Atu3282 at 307.850 kb on - strand, within Atu3282 at 307.852 kb on + strand, within Atu3282 at 307.864 kb on + strand, within Atu3282 at 307.933 kb on + strand, within Atu3282 at 308.009 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.198 kb on - strand, within Atu3282 at 308.292 kb on + strand, within Atu3282 at 308.307 kb on - strand, within Atu3282 at 308.343 kb on + strand, within Atu3282 at 308.343 kb on - strand, within Atu3282 at 308.365 kb on + strand, within Atu3282 at 308.373 kb on + strand, within Atu3282 at 308.386 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.414 kb on - strand, within Atu3282 at 308.433 kb on + strand, within Atu3282 at 308.468 kb on + strand, within Atu3282 at 308.518 kb on - strand at 308.624 kb on + strand at 308.665 kb on - strand at 308.724 kb on + strand at 308.759 kb on - strand at 308.770 kb on + strand at 308.911 kb on + strand, within Atu3283 at 308.918 kb on - strand, within Atu3283 at 308.924 kb on + strand, within Atu3283 at 308.940 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 309.053 kb on - strand, within Atu3283 at 309.066 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.081 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.102 kb on + strand, within Atu3283 at 309.136 kb on + strand, within Atu3283 at 309.164 kb on + strand, within Atu3283 at 309.172 kb on + strand, within Atu3283 at 309.213 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.385 kb on + strand, within Atu3283 at 309.446 kb on - strand, within Atu3283 at 309.502 kb on - strand, within Atu3283 at 309.550 kb on - strand, within Atu3283 at 309.556 kb on + strand, within Atu3283 at 309.567 kb on + strand, within Atu3283 at 309.573 kb on - strand, within Atu3283 at 309.575 kb on - strand, within Atu3283 at 309.609 kb on - strand at 309.678 kb on + strand at 309.694 kb on - strand at 309.721 kb on - strand at 309.833 kb on - strand, within Atu3284 at 309.845 kb on - strand, within Atu3284 at 309.923 kb on + strand, within Atu3284 at 309.923 kb on - strand, within Atu3284 at 309.944 kb on + strand, within Atu3284 at 309.957 kb on - strand, within Atu3284 at 310.019 kb on - strand, within Atu3284 at 310.123 kb on - strand, within Atu3284 at 310.141 kb on - strand, within Atu3284 at 310.144 kb on + strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.154 kb on + strand, within Atu3284 at 310.163 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.332 kb on + strand, within Atu3284 at 310.342 kb on + strand, within Atu3284 at 310.359 kb on + strand, within Atu3284 at 310.511 kb on + strand at 310.541 kb on + strand at 310.548 kb on + strand at 310.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 307,790 + Atu3282 0.35 -0.9 307,803 - Atu3282 0.36 +0.2 307,840 + Atu3282 0.39 -0.1 307,850 - Atu3282 0.40 -0.5 307,852 + Atu3282 0.40 -0.1 307,864 + Atu3282 0.41 -1.1 307,933 + Atu3282 0.47 +1.2 308,009 + Atu3282 0.53 +0.4 308,196 + Atu3282 0.68 -0.2 308,196 + Atu3282 0.68 +0.1 308,198 - Atu3282 0.68 +2.2 308,292 + Atu3282 0.75 -0.3 308,307 - Atu3282 0.77 +0.9 308,343 + Atu3282 0.80 -0.1 308,343 - Atu3282 0.80 +0.7 308,365 + Atu3282 0.81 -0.9 308,373 + Atu3282 0.82 +0.0 308,386 + Atu3282 0.83 +0.1 308,388 + Atu3282 0.83 -0.4 308,388 + Atu3282 0.83 -1.7 308,388 + Atu3282 0.83 -0.1 308,388 + Atu3282 0.83 +0.8 308,396 - Atu3282 0.84 -0.4 308,396 - Atu3282 0.84 -1.3 308,396 - Atu3282 0.84 -2.3 308,396 - Atu3282 0.84 +0.0 308,414 - Atu3282 0.85 +0.1 308,433 + Atu3282 0.87 +0.4 308,468 + Atu3282 0.90 +0.8 308,518 - -1.4 308,624 + +0.6 308,665 - +0.6 308,724 + +1.2 308,759 - +0.9 308,770 + +0.5 308,911 + Atu3283 0.17 +0.6 308,918 - Atu3283 0.17 +0.8 308,924 + Atu3283 0.18 +0.6 308,940 + Atu3283 0.20 +0.6 308,942 + Atu3283 0.20 +0.4 308,942 + Atu3283 0.20 +0.2 308,948 - Atu3283 0.20 +0.7 308,948 - Atu3283 0.20 -0.1 308,950 - Atu3283 0.21 -0.4 308,950 - Atu3283 0.21 -0.4 309,053 - Atu3283 0.32 +0.2 309,066 + Atu3283 0.33 -0.9 309,080 + Atu3283 0.35 -0.5 309,080 + Atu3283 0.35 +0.6 309,080 + Atu3283 0.35 +0.5 309,081 - Atu3283 0.35 -1.1 309,088 - Atu3283 0.36 +0.3 309,088 - Atu3283 0.36 +0.1 309,088 - Atu3283 0.36 -1.6 309,088 - Atu3283 0.36 +0.4 309,102 + Atu3283 0.37 +1.6 309,136 + Atu3283 0.41 +0.8 309,164 + Atu3283 0.44 -0.2 309,172 + Atu3283 0.45 -0.7 309,213 + Atu3283 0.49 +0.1 309,223 + Atu3283 0.50 +0.2 309,223 + Atu3283 0.50 +0.2 309,385 + Atu3283 0.68 +1.1 309,446 - Atu3283 0.74 -0.0 309,502 - Atu3283 0.80 +0.3 309,550 - Atu3283 0.85 +2.3 309,556 + Atu3283 0.86 -1.1 309,567 + Atu3283 0.87 +1.0 309,573 - Atu3283 0.88 -0.4 309,575 - Atu3283 0.88 +0.2 309,609 - +1.2 309,678 + +0.6 309,694 - -0.3 309,721 - +1.2 309,833 - Atu3284 0.17 -0.8 309,845 - Atu3284 0.18 -0.1 309,923 + Atu3284 0.27 -0.6 309,923 - Atu3284 0.27 -0.0 309,944 + Atu3284 0.30 -0.3 309,957 - Atu3284 0.31 -0.1 310,019 - Atu3284 0.38 -0.4 310,123 - Atu3284 0.51 -0.4 310,141 - Atu3284 0.53 -0.1 310,144 + Atu3284 0.53 +0.6 310,152 - Atu3284 0.54 +1.2 310,152 - Atu3284 0.54 -0.8 310,154 + Atu3284 0.54 -0.8 310,163 + Atu3284 0.55 +0.6 310,264 + Atu3284 0.67 -0.0 310,264 + Atu3284 0.67 -0.2 310,264 + Atu3284 0.67 +0.2 310,264 + Atu3284 0.67 +1.0 310,264 + Atu3284 0.67 -0.7 310,272 - Atu3284 0.68 +0.2 310,272 - Atu3284 0.68 +1.8 310,332 + Atu3284 0.75 -0.6 310,342 + Atu3284 0.76 +1.2 310,359 + Atu3284 0.78 +0.6 310,511 + +0.2 310,541 + -0.6 310,548 + -0.4 310,556 - -0.0
Or see this region's nucleotide sequence