Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3212 and Atu3213 are separated by 9 nucleotides Atu3213 and Atu3214 overlap by 4 nucleotides Atu3214 and Atu3215 overlap by 4 nucleotides
Atu3212: Atu3212 - oligopeptide ABC transporter substrate-binding protein, at 226,501 to 228,198
Atu3212
Atu3213: Atu3213 - oligopeptide ABC transporter permease, at 228,208 to 229,197
Atu3213
Atu3214: Atu3214 - oligopeptide ABC transporter permease, at 229,194 to 230,024
Atu3214
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.254 kb on + strand, within Atu3212 at 227.315 kb on + strand, within Atu3212 at 227.441 kb on + strand, within Atu3212 at 227.441 kb on + strand, within Atu3212 at 227.449 kb on - strand, within Atu3212 at 227.449 kb on - strand, within Atu3212 at 227.479 kb on + strand, within Atu3212 at 227.487 kb on - strand, within Atu3212 at 227.505 kb on + strand, within Atu3212 at 227.574 kb on + strand, within Atu3212 at 227.620 kb on + strand, within Atu3212 at 227.628 kb on - strand, within Atu3212 at 227.634 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.657 kb on - strand, within Atu3212 at 227.670 kb on + strand, within Atu3212 at 227.687 kb on + strand, within Atu3212 at 227.756 kb on + strand, within Atu3212 at 227.803 kb on - strand, within Atu3212 at 227.803 kb on - strand, within Atu3212 at 227.837 kb on - strand, within Atu3212 at 227.971 kb on - strand, within Atu3212 at 228.000 kb on - strand, within Atu3212 at 228.163 kb on + strand at 228.163 kb on + strand at 228.171 kb on - strand at 228.261 kb on - strand at 228.390 kb on + strand, within Atu3213 at 228.487 kb on + strand, within Atu3213 at 228.495 kb on + strand, within Atu3213 at 228.515 kb on - strand, within Atu3213 at 228.527 kb on - strand, within Atu3213 at 228.665 kb on + strand, within Atu3213 at 228.699 kb on - strand, within Atu3213 at 228.708 kb on + strand, within Atu3213 at 228.720 kb on - strand, within Atu3213 at 228.765 kb on + strand, within Atu3213 at 228.768 kb on - strand, within Atu3213 at 228.815 kb on + strand, within Atu3213 at 228.825 kb on + strand, within Atu3213 at 228.891 kb on + strand, within Atu3213 at 228.924 kb on + strand, within Atu3213 at 229.047 kb on + strand, within Atu3213 at 229.048 kb on + strand, within Atu3213 at 229.099 kb on - strand at 229.099 kb on - strand at 229.099 kb on - strand at 229.109 kb on - strand at 229.111 kb on + strand at 229.193 kb on - strand at 229.230 kb on - strand at 229.266 kb on - strand at 229.353 kb on + strand, within Atu3214 at 229.359 kb on - strand, within Atu3214 at 229.366 kb on + strand, within Atu3214 at 229.369 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.389 kb on - strand, within Atu3214 at 229.413 kb on + strand, within Atu3214 at 229.526 kb on - strand, within Atu3214 at 229.596 kb on - strand, within Atu3214 at 229.728 kb on - strand, within Atu3214 at 229.875 kb on - strand, within Atu3214 at 229.901 kb on + strand, within Atu3214 at 229.971 kb on - strand at 229.983 kb on + strand at 229.991 kb on - strand at 229.991 kb on - strand at 230.082 kb on + strand at 230.090 kb on - strand at 230.090 kb on - strand at 230.100 kb on - strand at 230.107 kb on - strand, within Atu3215
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 227,254 + Atu3212 0.44 +0.3 227,315 + Atu3212 0.48 -0.9 227,441 + Atu3212 0.55 +0.2 227,441 + Atu3212 0.55 +0.7 227,449 - Atu3212 0.56 -0.0 227,449 - Atu3212 0.56 -0.4 227,479 + Atu3212 0.58 +1.2 227,487 - Atu3212 0.58 +0.3 227,505 + Atu3212 0.59 -1.2 227,574 + Atu3212 0.63 -0.6 227,620 + Atu3212 0.66 +0.1 227,628 - Atu3212 0.66 +0.6 227,634 - Atu3212 0.67 +0.6 227,657 - Atu3212 0.68 +0.4 227,657 - Atu3212 0.68 +0.6 227,657 - Atu3212 0.68 -0.5 227,670 + Atu3212 0.69 +1.6 227,687 + Atu3212 0.70 +0.5 227,756 + Atu3212 0.74 +1.6 227,803 - Atu3212 0.77 -1.0 227,803 - Atu3212 0.77 -0.6 227,837 - Atu3212 0.79 -1.6 227,971 - Atu3212 0.87 +0.4 228,000 - Atu3212 0.88 -0.1 228,163 + +0.2 228,163 + +0.2 228,171 - -0.4 228,261 - -1.2 228,390 + Atu3213 0.18 -0.5 228,487 + Atu3213 0.28 +0.3 228,495 + Atu3213 0.29 -0.0 228,515 - Atu3213 0.31 +0.7 228,527 - Atu3213 0.32 +0.2 228,665 + Atu3213 0.46 -0.6 228,699 - Atu3213 0.50 -0.7 228,708 + Atu3213 0.51 -0.9 228,720 - Atu3213 0.52 -0.5 228,765 + Atu3213 0.56 +1.2 228,768 - Atu3213 0.57 -1.6 228,815 + Atu3213 0.61 +1.0 228,825 + Atu3213 0.62 -0.2 228,891 + Atu3213 0.69 +0.2 228,924 + Atu3213 0.72 -0.2 229,047 + Atu3213 0.85 -0.7 229,048 + Atu3213 0.85 -1.4 229,099 - -0.4 229,099 - -0.4 229,099 - -0.6 229,109 - -0.1 229,111 + +0.2 229,193 - +0.6 229,230 - +0.5 229,266 - +0.2 229,353 + Atu3214 0.19 +1.2 229,359 - Atu3214 0.20 -0.3 229,366 + Atu3214 0.21 -0.4 229,369 - Atu3214 0.21 -0.1 229,374 - Atu3214 0.22 +0.9 229,374 - Atu3214 0.22 +0.5 229,389 - Atu3214 0.23 +0.0 229,413 + Atu3214 0.26 +0.2 229,526 - Atu3214 0.40 +0.3 229,596 - Atu3214 0.48 +0.0 229,728 - Atu3214 0.64 +0.6 229,875 - Atu3214 0.82 +0.1 229,901 + Atu3214 0.85 -0.8 229,971 - -0.2 229,983 + -0.9 229,991 - +0.9 229,991 - +0.6 230,082 + +0.5 230,090 - -2.9 230,090 - -0.5 230,100 - +0.3 230,107 - Atu3215 0.11 -0.2
Or see this region's nucleotide sequence