Strain Fitness in Agrobacterium fabrum C58 around Atu2341

Experiment: Erythromycin 12.5 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Erythromycin 12.5 ug/mL
2,318,208	+		Atu2339	0.89	+0.1
2,318,308	+				-0.1
2,318,308	-				-0.2
2,318,387	-				-1.5
2,318,397	+				-0.5
2,318,428	-		Atu2340	0.12	+0.7
2,318,434	+		Atu2340	0.13	-0.3
2,318,434	+		Atu2340	0.13	+0.4
2,318,442	-		Atu2340	0.14	-0.6
2,318,442	-		Atu2340	0.14	-0.3
2,318,447	-		Atu2340	0.14	-0.4
2,318,476	-		Atu2340	0.18	-0.4
2,318,478	+		Atu2340	0.18	+0.7
2,318,541	+		Atu2340	0.26	-1.0
2,318,570	+		Atu2340	0.29	+0.1
2,318,577	+		Atu2340	0.30	+0.4
2,318,577	+		Atu2340	0.30	+0.2
2,318,585	-		Atu2340	0.31	+0.1
2,318,644	+		Atu2340	0.38	+0.6
2,318,695	+		Atu2340	0.45	-0.5
2,318,783	-		Atu2340	0.55	+1.4
2,318,822	+		Atu2340	0.60	+1.2
2,318,884	-		Atu2340	0.68	-0.2
2,319,076	+				+0.1
2,319,194	+				+0.1
2,319,213	-				+0.4
2,319,213	-				-0.2
2,319,241	+		Atu2341	0.15	-0.9
2,319,264	+		Atu2341	0.18	-0.6
2,319,383	-		Atu2341	0.38	-0.2
2,319,415	+		Atu2341	0.44	-1.1
2,319,473	-		Atu2341	0.53	+1.4
2,319,494	+		Atu2341	0.57	-0.4
2,319,494	+		Atu2341	0.57	-0.5
2,319,522	+		Atu2341	0.62	+0.4
2,319,578	-		Atu2341	0.71	-0.3
2,319,580	+		Atu2341	0.71	-0.4
2,319,698	-				-1.4
2,319,783	+				-0.4
2,319,829	+				-0.4
2,319,837	-				-0.6
2,319,935	-		Atu2342	0.23	+2.2
2,320,004	+		Atu2342	0.36	-0.0
2,320,004	+		Atu2342	0.36	+0.5
2,320,087	-		Atu2342	0.52	-0.3
2,320,153	-		Atu2342	0.65	+0.2
2,320,153	-		Atu2342	0.65	+0.1
2,320,167	+		Atu2342	0.68	+0.3
2,320,175	-		Atu2342	0.69	-0.4
2,320,270	+		Atu2342	0.88	+0.4
2,320,278	-		Atu2342	0.89	-0.9
2,320,363	-				+0.6
2,320,401	+				+0.2
2,320,401	+				+0.5
2,320,403	+				-2.4
2,320,567	-		Atu2343	0.31	-0.7
2,320,633	-		Atu2343	0.46	-0.0
2,320,640	+		Atu2343	0.47	+0.4
2,320,677	+		Atu2343	0.55	+0.2
2,320,678	-		Atu2343	0.55	+1.8