Strain Fitness in Agrobacterium fabrum C58 around Atu0286

Experiment: Erythromycin 12.5 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0285 and Atu0286 are separated by 3 nucleotidesAtu0286 and Atu0287 overlap by 1 nucleotides Atu0285: Atu0285 - hypothetical protein, at 278,400 to 279,494 Atu0285 Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619 Atu0286 Atu0287: Atu0287 - hypothetical protein, at 280,619 to 282,160 Atu0287 Position (kb) 279 280 281Strain fitness (log2 ratio) -1 0 1 2 3at 278.509 kb on - strandat 278.592 kb on + strand, within Atu0285at 278.609 kb on - strand, within Atu0285at 278.619 kb on + strand, within Atu0285at 278.690 kb on + strand, within Atu0285at 278.692 kb on + strand, within Atu0285at 278.692 kb on + strand, within Atu0285at 278.700 kb on - strand, within Atu0285at 278.700 kb on - strand, within Atu0285at 278.700 kb on - strand, within Atu0285at 278.751 kb on - strand, within Atu0285at 278.826 kb on + strand, within Atu0285at 278.836 kb on + strand, within Atu0285at 278.890 kb on - strand, within Atu0285at 279.001 kb on + strand, within Atu0285at 279.026 kb on + strand, within Atu0285at 279.054 kb on + strand, within Atu0285at 279.101 kb on + strand, within Atu0285at 279.101 kb on + strand, within Atu0285at 279.174 kb on + strand, within Atu0285at 279.174 kb on + strand, within Atu0285at 279.238 kb on + strand, within Atu0285at 279.570 kb on + strandat 279.583 kb on + strandat 279.603 kb on - strandat 279.630 kb on - strand, within Atu0286at 279.647 kb on - strand, within Atu0286at 279.728 kb on + strand, within Atu0286at 279.753 kb on + strand, within Atu0286at 279.761 kb on - strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.801 kb on + strand, within Atu0286at 279.821 kb on + strand, within Atu0286at 279.857 kb on - strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.911 kb on - strand, within Atu0286at 279.921 kb on - strand, within Atu0286at 280.004 kb on - strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.208 kb on + strand, within Atu0286at 280.230 kb on - strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.415 kb on + strand, within Atu0286at 280.421 kb on - strand, within Atu0286at 280.453 kb on - strand, within Atu0286at 280.461 kb on + strand, within Atu0286at 280.500 kb on - strand, within Atu0286at 280.502 kb on + strand, within Atu0286at 280.507 kb on + strandat 280.510 kb on - strandat 280.510 kb on - strandat 280.515 kb on - strandat 280.538 kb on - strandat 280.681 kb on - strandat 280.734 kb on - strandat 280.734 kb on - strandat 280.764 kb on - strandat 280.777 kb on - strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.875 kb on - strand, within Atu0287at 280.896 kb on - strand, within Atu0287at 281.006 kb on + strand, within Atu0287at 281.147 kb on + strand, within Atu0287at 281.147 kb on - strand, within Atu0287at 281.245 kb on + strand, within Atu0287at 281.305 kb on + strand, within Atu0287at 281.305 kb on - strand, within Atu0287at 281.364 kb on - strand, within Atu0287at 281.385 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.409 kb on - strand, within Atu0287at 281.446 kb on + strand, within Atu0287at 281.487 kb on + strand, within Atu0287at 281.492 kb on - strand, within Atu0287at 281.496 kb on - strand, within Atu0287at 281.501 kb on - strand, within Atu0287

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Per-strain Table

Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL
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278,509 - +0.2
278,592 + Atu0285 0.18 +0.2
278,609 - Atu0285 0.19 +1.3
278,619 + Atu0285 0.20 -0.3
278,690 + Atu0285 0.26 -0.6
278,692 + Atu0285 0.27 +0.7
278,692 + Atu0285 0.27 +0.1
278,700 - Atu0285 0.27 +0.0
278,700 - Atu0285 0.27 -0.4
278,700 - Atu0285 0.27 -0.1
278,751 - Atu0285 0.32 +0.2
278,826 + Atu0285 0.39 +0.2
278,836 + Atu0285 0.40 +0.2
278,890 - Atu0285 0.45 +0.3
279,001 + Atu0285 0.55 +0.7
279,026 + Atu0285 0.57 +0.3
279,054 + Atu0285 0.60 +0.2
279,101 + Atu0285 0.64 -0.8
279,101 + Atu0285 0.64 +0.3
279,174 + Atu0285 0.71 -1.3
279,174 + Atu0285 0.71 +0.0
279,238 + Atu0285 0.77 +0.6
279,570 + +0.7
279,583 + +0.1
279,603 - +0.5
279,630 - Atu0286 0.12 +0.4
279,647 - Atu0286 0.13 -0.0
279,728 + Atu0286 0.20 +0.2
279,753 + Atu0286 0.23 -0.6
279,761 - Atu0286 0.23 -1.1
279,772 + Atu0286 0.24 -0.3
279,772 + Atu0286 0.24 +0.1
279,772 + Atu0286 0.24 +0.1
279,772 + Atu0286 0.24 +0.7
279,772 + Atu0286 0.24 +0.9
279,772 + Atu0286 0.24 -0.2
279,780 - Atu0286 0.25 +1.5
279,780 - Atu0286 0.25 -0.0
279,780 - Atu0286 0.25 -0.5
279,801 + Atu0286 0.27 +0.6
279,821 + Atu0286 0.29 +0.3
279,857 - Atu0286 0.32 -0.2
279,893 + Atu0286 0.35 -0.7
279,893 + Atu0286 0.35 +0.2
279,893 + Atu0286 0.35 -0.5
279,893 + Atu0286 0.35 +2.1
279,893 + Atu0286 0.35 -0.0
279,893 + Atu0286 0.35 -0.4
279,893 + Atu0286 0.35 +1.0
279,901 - Atu0286 0.36 +0.6
279,901 - Atu0286 0.36 +0.1
279,901 - Atu0286 0.36 +0.2
279,911 - Atu0286 0.37 -0.4
279,921 - Atu0286 0.38 +0.7
280,004 - Atu0286 0.45 +0.3
280,142 + Atu0286 0.57 +0.7
280,142 + Atu0286 0.57 -0.5
280,208 + Atu0286 0.63 +0.4
280,230 - Atu0286 0.65 -0.3
280,258 + Atu0286 0.68 +0.4
280,258 + Atu0286 0.68 +1.6
280,266 - Atu0286 0.68 +0.2
280,266 - Atu0286 0.68 -0.1
280,266 - Atu0286 0.68 +0.1
280,332 + Atu0286 0.74 +0.1
280,332 + Atu0286 0.74 +0.7
280,332 + Atu0286 0.74 +2.5
280,332 + Atu0286 0.74 +2.1
280,332 + Atu0286 0.74 +0.2
280,332 + Atu0286 0.74 -0.3
280,340 - Atu0286 0.75 -0.1
280,340 - Atu0286 0.75 +1.3
280,340 - Atu0286 0.75 +0.3
280,415 + Atu0286 0.82 +0.1
280,421 - Atu0286 0.82 +0.3
280,453 - Atu0286 0.85 +0.9
280,461 + Atu0286 0.86 +1.1
280,500 - Atu0286 0.89 +3.6
280,502 + Atu0286 0.89 +0.2
280,507 + -0.7
280,510 - -0.5
280,510 - -0.4
280,515 - -1.1
280,538 - +0.1
280,681 - -0.1
280,734 - -0.0
280,734 - -0.2
280,764 - -1.5
280,777 - Atu0287 0.10 +0.8
280,815 + Atu0287 0.13 +0.5
280,815 + Atu0287 0.13 +0.6
280,875 - Atu0287 0.17 +0.4
280,896 - Atu0287 0.18 +0.5
281,006 + Atu0287 0.25 +0.1
281,147 + Atu0287 0.34 -0.9
281,147 - Atu0287 0.34 -1.1
281,245 + Atu0287 0.41 +1.3
281,305 + Atu0287 0.44 +0.2
281,305 - Atu0287 0.44 -0.4
281,364 - Atu0287 0.48 -0.9
281,385 + Atu0287 0.50 +1.5
281,407 + Atu0287 0.51 +0.1
281,407 + Atu0287 0.51 -0.1
281,409 - Atu0287 0.51 -1.0
281,446 + Atu0287 0.54 -0.0
281,487 + Atu0287 0.56 -0.0
281,492 - Atu0287 0.57 +0.6
281,496 - Atu0287 0.57 +0.1
281,501 - Atu0287 0.57 -1.5

Or see this region's nucleotide sequence