Experiment: Erythromycin 12.5 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0248 and Atu0249 are separated by 3 nucleotides Atu0249 and Atu0250 are separated by 127 nucleotides Atu0250 and Atu0251 are separated by 206 nucleotides
Atu0248: Atu0248 - transcriptional regulator, AraC family, at 246,323 to 247,420
Atu0248
Atu0249: Atu0249 - ABC transporter, substrate binding protein (sugar), at 247,424 to 248,527
Atu0249
Atu0250: Atu0250 - hypothetical protein, at 248,655 to 249,062
Atu0250
Atu0251: Atu0251 - hypothetical protein, at 249,269 to 250,252
Atu0251
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.438 kb on + strand, within Atu0248 at 246.445 kb on + strand, within Atu0248 at 246.482 kb on - strand, within Atu0248 at 246.512 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.584 kb on - strand, within Atu0248 at 246.589 kb on - strand, within Atu0248 at 246.597 kb on + strand, within Atu0248 at 246.619 kb on - strand, within Atu0248 at 246.665 kb on + strand, within Atu0248 at 246.793 kb on + strand, within Atu0248 at 246.877 kb on - strand, within Atu0248 at 246.916 kb on + strand, within Atu0248 at 246.927 kb on + strand, within Atu0248 at 247.029 kb on - strand, within Atu0248 at 247.068 kb on - strand, within Atu0248 at 247.120 kb on - strand, within Atu0248 at 247.247 kb on + strand, within Atu0248 at 247.346 kb on + strand at 247.388 kb on - strand at 247.493 kb on + strand at 247.615 kb on + strand, within Atu0249 at 247.630 kb on + strand, within Atu0249 at 247.662 kb on - strand, within Atu0249 at 247.671 kb on - strand, within Atu0249 at 247.721 kb on - strand, within Atu0249 at 247.742 kb on - strand, within Atu0249 at 247.797 kb on - strand, within Atu0249 at 247.808 kb on - strand, within Atu0249 at 247.907 kb on - strand, within Atu0249 at 247.989 kb on - strand, within Atu0249 at 248.012 kb on - strand, within Atu0249 at 248.137 kb on + strand, within Atu0249 at 248.194 kb on - strand, within Atu0249 at 248.201 kb on + strand, within Atu0249 at 248.242 kb on - strand, within Atu0249 at 248.363 kb on + strand, within Atu0249 at 248.371 kb on - strand, within Atu0249 at 248.405 kb on + strand, within Atu0249 at 248.607 kb on - strand at 248.653 kb on + strand at 248.661 kb on - strand at 248.898 kb on + strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.916 kb on - strand, within Atu0250 at 248.918 kb on + strand, within Atu0250 at 248.936 kb on + strand, within Atu0250 at 248.965 kb on - strand, within Atu0250 at 248.982 kb on - strand, within Atu0250 at 249.051 kb on + strand at 249.058 kb on + strand at 249.353 kb on + strand at 249.389 kb on + strand, within Atu0251 at 249.408 kb on + strand, within Atu0251 at 249.462 kb on + strand, within Atu0251 at 249.522 kb on + strand, within Atu0251
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 12.5 ug/mL remove 246,438 + Atu0248 0.10 +0.8 246,445 + Atu0248 0.11 +0.4 246,482 - Atu0248 0.14 -0.4 246,512 + Atu0248 0.17 -0.7 246,576 + Atu0248 0.23 -0.8 246,576 + Atu0248 0.23 +0.5 246,584 - Atu0248 0.24 -0.2 246,589 - Atu0248 0.24 -0.3 246,597 + Atu0248 0.25 -0.2 246,619 - Atu0248 0.27 +0.0 246,665 + Atu0248 0.31 -0.2 246,793 + Atu0248 0.43 +0.4 246,877 - Atu0248 0.50 +0.5 246,916 + Atu0248 0.54 -0.2 246,927 + Atu0248 0.55 -0.2 247,029 - Atu0248 0.64 -0.2 247,068 - Atu0248 0.68 -1.0 247,120 - Atu0248 0.73 -0.1 247,247 + Atu0248 0.84 +1.2 247,346 + -0.5 247,388 - -0.9 247,493 + -2.1 247,615 + Atu0249 0.17 -1.0 247,630 + Atu0249 0.19 -1.5 247,662 - Atu0249 0.22 -1.1 247,671 - Atu0249 0.22 -2.1 247,721 - Atu0249 0.27 -1.0 247,742 - Atu0249 0.29 +0.3 247,797 - Atu0249 0.34 -1.6 247,808 - Atu0249 0.35 -1.3 247,907 - Atu0249 0.44 -1.8 247,989 - Atu0249 0.51 -2.3 248,012 - Atu0249 0.53 -1.8 248,137 + Atu0249 0.65 -1.9 248,194 - Atu0249 0.70 -2.8 248,201 + Atu0249 0.70 -0.7 248,242 - Atu0249 0.74 -0.5 248,363 + Atu0249 0.85 -1.9 248,371 - Atu0249 0.86 -2.0 248,405 + Atu0249 0.89 -1.7 248,607 - +2.3 248,653 + -1.5 248,661 - -0.0 248,898 + Atu0250 0.60 -1.5 248,916 - Atu0250 0.64 +0.5 248,916 - Atu0250 0.64 +0.6 248,916 - Atu0250 0.64 -0.2 248,918 + Atu0250 0.64 +2.2 248,936 + Atu0250 0.69 -1.3 248,965 - Atu0250 0.76 -0.4 248,982 - Atu0250 0.80 -0.2 249,051 + -0.7 249,058 + -0.0 249,353 + -0.2 249,389 + Atu0251 0.12 +0.2 249,408 + Atu0251 0.14 -0.4 249,462 + Atu0251 0.20 +1.5 249,522 + Atu0251 0.26 -0.3
Or see this region's nucleotide sequence