Strain Fitness in Agrobacterium fabrum C58 around Atu2759
Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Erythromycin 6.25 ug/mL |
---|---|---|---|---|---|
remove | |||||
2,758,266 | + | Atu2758 | 0.41 | +0.5 | |
2,758,332 | + | Atu2758 | 0.46 | +1.2 | |
2,758,342 | + | Atu2758 | 0.47 | -0.0 | |
2,758,350 | + | Atu2758 | 0.48 | +0.2 | |
2,758,350 | + | Atu2758 | 0.48 | -0.1 | |
2,758,368 | + | Atu2758 | 0.49 | +0.5 | |
2,758,368 | + | Atu2758 | 0.49 | -0.5 | |
2,758,461 | - | Atu2758 | 0.57 | -0.1 | |
2,758,528 | + | Atu2758 | 0.62 | -0.0 | |
2,758,625 | + | Atu2758 | 0.70 | +0.5 | |
2,758,728 | + | Atu2758 | 0.79 | -0.5 | |
2,758,812 | + | Atu2758 | 0.86 | +0.9 | |
2,758,812 | + | Atu2758 | 0.86 | +0.7 | |
2,758,812 | + | Atu2758 | 0.86 | -0.9 | |
2,758,820 | - | Atu2758 | 0.87 | -0.1 | |
2,758,820 | - | Atu2758 | 0.87 | -0.6 | |
2,758,904 | + | +0.3 | |||
2,758,930 | + | -0.2 | |||
2,758,936 | + | +0.0 | |||
2,758,936 | + | +0.1 | |||
2,758,944 | - | +1.5 | |||
2,759,001 | - | -0.1 | |||
2,759,030 | - | +0.1 | |||
2,761,882 | + | -1.0 | |||
2,761,903 | + | -0.1 | |||
2,762,730 | + | -0.5 | |||
2,762,810 | + | -1.1 |
Or see this region's nucleotide sequence