Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5126 and Atu5127 overlap by 4 nucleotides Atu5127 and Atu5128 overlap by 11 nucleotides Atu5128 and Atu5129 are separated by 27 nucleotides
Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372
Atu5126
Atu5127: Atu5127 - ABC transporter membrane spanning protein (mannopine), at 134,369 to 135,271
Atu5127
Atu5128: Atu5128 - ABC transporter membrane spanning protein (mannopine), at 135,261 to 136,118
Atu5128
Atu5129: Atu5129 - ABC transporter substrate binding protein (mannopine), at 136,146 to 137,228
Atu5129
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1
2
3 at 134.367 kb on - strand at 134.443 kb on + strand at 134.547 kb on - strand, within Atu5127 at 134.556 kb on + strand, within Atu5127 at 134.564 kb on - strand, within Atu5127 at 134.572 kb on - strand, within Atu5127 at 134.574 kb on - strand, within Atu5127 at 134.616 kb on - strand, within Atu5127 at 134.621 kb on + strand, within Atu5127 at 134.654 kb on + strand, within Atu5127 at 134.662 kb on - strand, within Atu5127 at 134.688 kb on + strand, within Atu5127 at 134.698 kb on + strand, within Atu5127 at 134.698 kb on + strand, within Atu5127 at 134.706 kb on - strand, within Atu5127 at 134.706 kb on - strand, within Atu5127 at 134.706 kb on - strand, within Atu5127 at 134.737 kb on + strand, within Atu5127 at 134.745 kb on + strand, within Atu5127 at 134.750 kb on + strand, within Atu5127 at 134.750 kb on + strand, within Atu5127 at 134.750 kb on - strand, within Atu5127 at 134.758 kb on - strand, within Atu5127 at 134.782 kb on + strand, within Atu5127 at 134.790 kb on - strand, within Atu5127 at 134.824 kb on - strand, within Atu5127 at 134.835 kb on - strand, within Atu5127 at 134.851 kb on + strand, within Atu5127 at 134.859 kb on - strand, within Atu5127 at 134.859 kb on - strand, within Atu5127 at 134.871 kb on - strand, within Atu5127 at 134.894 kb on - strand, within Atu5127 at 134.994 kb on + strand, within Atu5127 at 135.083 kb on + strand, within Atu5127 at 135.102 kb on - strand, within Atu5127 at 135.102 kb on - strand, within Atu5127 at 135.107 kb on - strand, within Atu5127 at 135.139 kb on + strand, within Atu5127 at 135.139 kb on + strand, within Atu5127 at 135.142 kb on + strand, within Atu5127 at 135.147 kb on - strand, within Atu5127 at 135.157 kb on - strand, within Atu5127 at 135.165 kb on - strand, within Atu5127 at 135.179 kb on + strand, within Atu5127 at 135.187 kb on - strand at 135.194 kb on - strand at 135.251 kb on + strand at 135.251 kb on + strand at 135.251 kb on + strand at 135.256 kb on + strand at 135.259 kb on - strand at 135.259 kb on - strand at 135.314 kb on + strand at 135.322 kb on - strand at 135.323 kb on + strand at 135.350 kb on + strand, within Atu5128 at 135.350 kb on + strand, within Atu5128 at 135.350 kb on + strand, within Atu5128 at 135.350 kb on + strand, within Atu5128 at 135.350 kb on + strand, within Atu5128 at 135.358 kb on - strand, within Atu5128 at 135.358 kb on - strand, within Atu5128 at 135.358 kb on - strand, within Atu5128 at 135.358 kb on - strand, within Atu5128 at 135.358 kb on - strand, within Atu5128 at 135.401 kb on + strand, within Atu5128 at 135.417 kb on + strand, within Atu5128 at 135.425 kb on - strand, within Atu5128 at 135.427 kb on + strand, within Atu5128 at 135.459 kb on + strand, within Atu5128 at 135.467 kb on - strand, within Atu5128 at 135.481 kb on + strand, within Atu5128 at 135.637 kb on + strand, within Atu5128 at 135.637 kb on + strand, within Atu5128 at 135.645 kb on - strand, within Atu5128 at 135.645 kb on - strand, within Atu5128 at 135.651 kb on - strand, within Atu5128 at 135.672 kb on + strand, within Atu5128 at 135.680 kb on - strand, within Atu5128 at 135.702 kb on + strand, within Atu5128 at 135.720 kb on - strand, within Atu5128 at 135.746 kb on - strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.753 kb on + strand, within Atu5128 at 135.755 kb on - strand, within Atu5128 at 135.761 kb on - strand, within Atu5128 at 135.761 kb on - strand, within Atu5128 at 135.761 kb on - strand, within Atu5128 at 135.787 kb on + strand, within Atu5128 at 135.787 kb on + strand, within Atu5128 at 135.787 kb on + strand, within Atu5128 at 135.795 kb on + strand, within Atu5128 at 135.802 kb on + strand, within Atu5128 at 135.828 kb on + strand, within Atu5128 at 135.836 kb on - strand, within Atu5128 at 135.886 kb on - strand, within Atu5128 at 135.886 kb on - strand, within Atu5128 at 136.076 kb on + strand at 136.099 kb on - strand at 136.100 kb on - strand at 136.109 kb on - strand at 136.119 kb on + strand at 136.119 kb on - strand at 136.119 kb on - strand at 136.121 kb on - strand at 136.153 kb on + strand at 136.207 kb on + strand at 136.225 kb on + strand at 136.310 kb on - strand, within Atu5129 at 136.320 kb on - strand, within Atu5129 at 136.321 kb on - strand, within Atu5129 at 136.371 kb on + strand, within Atu5129 at 136.393 kb on + strand, within Atu5129 at 136.418 kb on - strand, within Atu5129 at 136.428 kb on - strand, within Atu5129 at 136.475 kb on - strand, within Atu5129 at 136.480 kb on + strand, within Atu5129 at 136.487 kb on - strand, within Atu5129 at 136.527 kb on - strand, within Atu5129 at 136.535 kb on - strand, within Atu5129 at 136.580 kb on - strand, within Atu5129 at 136.630 kb on - strand, within Atu5129 at 136.698 kb on + strand, within Atu5129 at 136.706 kb on - strand, within Atu5129 at 136.710 kb on + strand, within Atu5129 at 136.710 kb on + strand, within Atu5129 at 136.792 kb on + strand, within Atu5129 at 136.796 kb on - strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.798 kb on + strand, within Atu5129 at 136.806 kb on + strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.806 kb on - strand, within Atu5129 at 136.883 kb on - strand, within Atu5129 at 136.900 kb on - strand, within Atu5129 at 137.039 kb on + strand, within Atu5129 at 137.042 kb on - strand, within Atu5129 at 137.047 kb on - strand, within Atu5129 at 137.055 kb on + strand, within Atu5129 at 137.078 kb on - strand, within Atu5129 at 137.118 kb on + strand, within Atu5129
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 6.25 ug/mL remove 134,367 - +0.5 134,443 + +1.0 134,547 - Atu5127 0.20 +0.4 134,556 + Atu5127 0.21 -0.4 134,564 - Atu5127 0.22 +0.6 134,572 - Atu5127 0.22 +1.0 134,574 - Atu5127 0.23 +0.4 134,616 - Atu5127 0.27 +0.0 134,621 + Atu5127 0.28 +0.6 134,654 + Atu5127 0.32 +0.8 134,662 - Atu5127 0.32 +0.7 134,688 + Atu5127 0.35 +0.1 134,698 + Atu5127 0.36 +1.4 134,698 + Atu5127 0.36 +0.5 134,706 - Atu5127 0.37 +0.3 134,706 - Atu5127 0.37 -0.0 134,706 - Atu5127 0.37 +0.0 134,737 + Atu5127 0.41 +0.4 134,745 + Atu5127 0.42 +0.0 134,750 + Atu5127 0.42 +1.9 134,750 + Atu5127 0.42 +0.5 134,750 - Atu5127 0.42 +0.3 134,758 - Atu5127 0.43 +0.4 134,782 + Atu5127 0.46 +0.4 134,790 - Atu5127 0.47 +0.8 134,824 - Atu5127 0.50 +0.8 134,835 - Atu5127 0.52 +0.1 134,851 + Atu5127 0.53 +0.4 134,859 - Atu5127 0.54 +0.6 134,859 - Atu5127 0.54 -0.7 134,871 - Atu5127 0.56 +0.3 134,894 - Atu5127 0.58 +0.4 134,994 + Atu5127 0.69 +1.1 135,083 + Atu5127 0.79 +0.3 135,102 - Atu5127 0.81 +3.0 135,102 - Atu5127 0.81 +1.4 135,107 - Atu5127 0.82 +0.2 135,139 + Atu5127 0.85 -0.1 135,139 + Atu5127 0.85 +2.0 135,142 + Atu5127 0.86 +0.4 135,147 - Atu5127 0.86 -0.9 135,157 - Atu5127 0.87 +1.4 135,165 - Atu5127 0.88 +0.4 135,179 + Atu5127 0.90 +1.7 135,187 - -0.4 135,194 - +0.8 135,251 + +0.9 135,251 + +0.9 135,251 + -0.3 135,256 + +0.6 135,259 - +0.4 135,259 - -0.3 135,314 + +0.1 135,322 - +0.5 135,323 + +0.6 135,350 + Atu5128 0.10 +0.4 135,350 + Atu5128 0.10 +0.1 135,350 + Atu5128 0.10 +0.5 135,350 + Atu5128 0.10 -0.3 135,350 + Atu5128 0.10 +0.3 135,358 - Atu5128 0.11 +0.4 135,358 - Atu5128 0.11 +0.3 135,358 - Atu5128 0.11 -0.1 135,358 - Atu5128 0.11 +0.4 135,358 - Atu5128 0.11 +0.9 135,401 + Atu5128 0.16 +1.4 135,417 + Atu5128 0.18 +1.0 135,425 - Atu5128 0.19 -0.2 135,427 + Atu5128 0.19 +0.5 135,459 + Atu5128 0.23 +0.6 135,467 - Atu5128 0.24 +0.4 135,481 + Atu5128 0.26 -1.1 135,637 + Atu5128 0.44 -0.1 135,637 + Atu5128 0.44 -0.4 135,645 - Atu5128 0.45 +1.1 135,645 - Atu5128 0.45 +1.2 135,651 - Atu5128 0.45 +0.3 135,672 + Atu5128 0.48 +0.8 135,680 - Atu5128 0.49 +0.7 135,702 + Atu5128 0.51 +0.0 135,720 - Atu5128 0.53 +0.4 135,746 - Atu5128 0.57 +0.3 135,753 + Atu5128 0.57 -0.0 135,753 + Atu5128 0.57 +1.0 135,753 + Atu5128 0.57 +0.7 135,753 + Atu5128 0.57 +0.2 135,753 + Atu5128 0.57 +0.8 135,753 + Atu5128 0.57 +0.8 135,755 - Atu5128 0.58 +0.4 135,761 - Atu5128 0.58 -0.2 135,761 - Atu5128 0.58 +1.0 135,761 - Atu5128 0.58 -0.3 135,787 + Atu5128 0.61 +0.9 135,787 + Atu5128 0.61 -0.0 135,787 + Atu5128 0.61 +0.4 135,795 + Atu5128 0.62 +0.1 135,802 + Atu5128 0.63 +0.7 135,828 + Atu5128 0.66 +0.8 135,836 - Atu5128 0.67 +0.1 135,886 - Atu5128 0.73 +0.4 135,886 - Atu5128 0.73 +0.7 136,076 + +0.5 136,099 - +0.3 136,100 - +0.5 136,109 - +0.2 136,119 + +1.4 136,119 - +0.7 136,119 - +0.4 136,121 - +0.4 136,153 + -0.2 136,207 + +1.0 136,225 + -0.3 136,310 - Atu5129 0.15 +0.6 136,320 - Atu5129 0.16 +1.4 136,321 - Atu5129 0.16 +0.4 136,371 + Atu5129 0.21 +0.8 136,393 + Atu5129 0.23 +0.2 136,418 - Atu5129 0.25 +1.6 136,428 - Atu5129 0.26 +0.9 136,475 - Atu5129 0.30 -0.2 136,480 + Atu5129 0.31 -0.1 136,487 - Atu5129 0.31 +2.8 136,527 - Atu5129 0.35 +0.7 136,535 - Atu5129 0.36 +1.0 136,580 - Atu5129 0.40 +0.4 136,630 - Atu5129 0.45 +0.4 136,698 + Atu5129 0.51 +1.6 136,706 - Atu5129 0.52 +0.4 136,710 + Atu5129 0.52 +0.1 136,710 + Atu5129 0.52 -0.6 136,792 + Atu5129 0.60 +0.3 136,796 - Atu5129 0.60 +0.9 136,798 + Atu5129 0.60 +0.3 136,798 + Atu5129 0.60 +0.8 136,798 + Atu5129 0.60 +0.3 136,798 + Atu5129 0.60 +0.4 136,798 + Atu5129 0.60 -0.0 136,806 + Atu5129 0.61 +1.2 136,806 - Atu5129 0.61 +0.9 136,806 - Atu5129 0.61 -0.5 136,806 - Atu5129 0.61 +0.1 136,806 - Atu5129 0.61 +0.7 136,806 - Atu5129 0.61 -0.3 136,806 - Atu5129 0.61 +0.4 136,806 - Atu5129 0.61 +0.4 136,806 - Atu5129 0.61 +0.5 136,806 - Atu5129 0.61 +0.8 136,806 - Atu5129 0.61 +0.8 136,806 - Atu5129 0.61 +0.4 136,883 - Atu5129 0.68 +0.2 136,900 - Atu5129 0.70 +0.4 137,039 + Atu5129 0.82 +1.9 137,042 - Atu5129 0.83 +0.4 137,047 - Atu5129 0.83 +3.4 137,055 + Atu5129 0.84 +0.7 137,078 - Atu5129 0.86 +1.1 137,118 + Atu5129 0.90 -0.7
Or see this region's nucleotide sequence