Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3745 and Atu3746 are separated by 88 nucleotides Atu3746 and Atu3747 are separated by 248 nucleotides
Atu3745: Atu3745 - FAD-binding dehydrogenase, at 828,081 to 829,724
Atu3745
Atu3746: Atu3746 - hypothetical protein, at 829,813 to 830,598
Atu3746
Atu3747: Atu3747 - hypothetical protein, at 830,847 to 831,869
Atu3747
Position (kb) 829
830
831 Strain fitness (log2 ratio) -1
0
1
2 at 828.883 kb on + strand, within Atu3745 at 828.914 kb on + strand, within Atu3745 at 829.106 kb on + strand, within Atu3745 at 829.139 kb on + strand, within Atu3745 at 829.288 kb on + strand, within Atu3745 at 829.312 kb on - strand, within Atu3745 at 829.398 kb on + strand, within Atu3745 at 829.447 kb on + strand, within Atu3745 at 829.447 kb on + strand, within Atu3745 at 829.449 kb on - strand, within Atu3745 at 829.459 kb on + strand, within Atu3745 at 829.493 kb on + strand, within Atu3745 at 829.525 kb on - strand, within Atu3745 at 829.633 kb on + strand at 829.860 kb on + strand at 829.868 kb on - strand at 830.025 kb on - strand, within Atu3746 at 830.239 kb on - strand, within Atu3746 at 830.331 kb on + strand, within Atu3746 at 830.339 kb on + strand, within Atu3746 at 830.692 kb on - strand at 830.759 kb on + strand at 830.767 kb on - strand at 830.878 kb on - strand at 830.960 kb on + strand, within Atu3747 at 830.965 kb on + strand, within Atu3747 at 831.069 kb on - strand, within Atu3747 at 831.165 kb on + strand, within Atu3747 at 831.178 kb on - strand, within Atu3747 at 831.188 kb on - strand, within Atu3747 at 831.222 kb on - strand, within Atu3747 at 831.245 kb on - strand, within Atu3747 at 831.291 kb on + strand, within Atu3747 at 831.325 kb on - strand, within Atu3747 at 831.369 kb on - strand, within Atu3747 at 831.382 kb on + strand, within Atu3747 at 831.390 kb on - strand, within Atu3747 at 831.432 kb on + strand, within Atu3747 at 831.531 kb on + strand, within Atu3747 at 831.592 kb on + strand, within Atu3747
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 6.25 ug/mL remove 828,883 + Atu3745 0.49 +2.7 828,914 + Atu3745 0.51 +1.8 829,106 + Atu3745 0.62 +0.4 829,139 + Atu3745 0.64 +0.3 829,288 + Atu3745 0.73 -0.2 829,312 - Atu3745 0.75 +1.0 829,398 + Atu3745 0.80 +0.6 829,447 + Atu3745 0.83 +0.1 829,447 + Atu3745 0.83 -1.2 829,449 - Atu3745 0.83 -0.4 829,459 + Atu3745 0.84 +0.4 829,493 + Atu3745 0.86 +0.6 829,525 - Atu3745 0.88 -0.0 829,633 + +0.4 829,860 + +0.6 829,868 - +0.1 830,025 - Atu3746 0.27 +0.2 830,239 - Atu3746 0.54 -1.0 830,331 + Atu3746 0.66 -1.0 830,339 + Atu3746 0.67 +0.4 830,692 - +0.0 830,759 + -0.1 830,767 - -0.1 830,878 - +0.1 830,960 + Atu3747 0.11 +0.6 830,965 + Atu3747 0.12 +0.7 831,069 - Atu3747 0.22 -1.1 831,165 + Atu3747 0.31 +0.1 831,178 - Atu3747 0.32 -0.5 831,188 - Atu3747 0.33 +0.8 831,222 - Atu3747 0.37 -0.0 831,245 - Atu3747 0.39 -0.4 831,291 + Atu3747 0.43 +0.2 831,325 - Atu3747 0.47 +1.5 831,369 - Atu3747 0.51 +0.4 831,382 + Atu3747 0.52 +0.2 831,390 - Atu3747 0.53 -0.5 831,432 + Atu3747 0.57 -0.6 831,531 + Atu3747 0.67 -0.3 831,592 + Atu3747 0.73 +0.1
Or see this region's nucleotide sequence