Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8092 and Atu2692 overlap by 4 nucleotides Atu2692 and Atu2693 are separated by 2 nucleotides Atu2693 and Atu2694 are separated by 32 nucleotides
Atu8092: Atu8092 - hypothetical protein, at 2,675,627 to 2,676,223
Atu8092
Atu2692: Atu2692 - intracellular septation protein, at 2,676,220 to 2,676,870
Atu2692
Atu2693: Atu2693 - cell division particle, at 2,676,873 to 2,678,309
Atu2693
Atu2694: Atu2694 - hypothetical protein, at 2,678,342 to 2,679,616
Atu2694
Position (kb)
2676
2677
2678
2679 Strain fitness (log2 ratio)
-1
0
1 at 2675.996 kb on + strand, within Atu8092 at 2676.004 kb on - strand, within Atu8092 at 2676.014 kb on - strand, within Atu8092 at 2676.024 kb on + strand, within Atu8092 at 2676.024 kb on + strand, within Atu8092 at 2676.025 kb on + strand, within Atu8092 at 2676.032 kb on - strand, within Atu8092 at 2676.047 kb on - strand, within Atu8092 at 2676.075 kb on + strand, within Atu8092 at 2676.083 kb on - strand, within Atu8092 at 2676.177 kb on - strand at 2676.186 kb on - strand at 2676.296 kb on - strand, within Atu2692 at 2676.367 kb on + strand, within Atu2692 at 2676.370 kb on - strand, within Atu2692 at 2676.375 kb on - strand, within Atu2692 at 2676.398 kb on + strand, within Atu2692 at 2676.660 kb on - strand, within Atu2692 at 2676.732 kb on - strand, within Atu2692 at 2678.433 kb on - strand at 2678.508 kb on - strand, within Atu2694 at 2678.562 kb on - strand, within Atu2694 at 2679.032 kb on - strand, within Atu2694
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 6.25 ug/mL remove 2,675,996 + Atu8092 0.62 +0.1 2,676,004 - Atu8092 0.63 -1.2 2,676,014 - Atu8092 0.65 -1.0 2,676,024 + Atu8092 0.66 -0.1 2,676,024 + Atu8092 0.66 -0.4 2,676,025 + Atu8092 0.67 +0.6 2,676,032 - Atu8092 0.68 +0.6 2,676,047 - Atu8092 0.70 -0.6 2,676,075 + Atu8092 0.75 +0.4 2,676,083 - Atu8092 0.76 +0.4 2,676,177 - +0.4 2,676,186 - +0.0 2,676,296 - Atu2692 0.12 -0.9 2,676,367 + Atu2692 0.23 +0.2 2,676,370 - Atu2692 0.23 -0.2 2,676,375 - Atu2692 0.24 -1.6 2,676,398 + Atu2692 0.27 -0.4 2,676,660 - Atu2692 0.68 -0.9 2,676,732 - Atu2692 0.79 -0.2 2,678,433 - +0.1 2,678,508 - Atu2694 0.13 -0.1 2,678,562 - Atu2694 0.17 -0.3 2,679,032 - Atu2694 0.54 +0.4
Or see this region's nucleotide sequence