Strain Fitness in Agrobacterium fabrum C58 around Atu1658

Experiment: Erythromycin 6.25 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Erythromycin 6.25 ug/mL
1,643,336	-				+1.3
1,643,336	-				+1.3
1,643,408	+				+0.3
1,643,409	+				-0.4
1,643,414	+				+1.2
1,643,430	+				+0.6
1,643,610	-				-1.0
1,643,648	+				-1.6
1,643,656	-				-1.1
1,643,687	-				-1.5
1,643,749	-				-0.4
1,643,758	-				-1.2
1,643,834	-				-0.3
1,643,834	-				+1.3
1,643,922	-		Atu1658	0.13	-0.8
1,643,979	-		Atu1658	0.16	-2.1
1,644,035	-		Atu1658	0.19	+0.1
1,644,087	-		Atu1658	0.22	-1.7
1,644,087	-		Atu1658	0.22	-1.1
1,644,092	-		Atu1658	0.22	-0.2
1,644,246	-		Atu1658	0.31	-0.2
1,644,253	-		Atu1658	0.31	+0.8
1,644,291	-		Atu1658	0.33	-0.2
1,644,292	-		Atu1658	0.33	-0.2
1,644,296	+		Atu1658	0.34	+0.3
1,644,435	+		Atu1658	0.41	-0.7
1,644,461	-		Atu1658	0.43	+0.3
1,644,791	-		Atu1658	0.61	-1.0
1,644,818	+		Atu1658	0.63	-0.6
1,644,998	-		Atu1658	0.73	-1.5
1,645,111	+		Atu1658	0.79	+0.8
1,645,111	+		Atu1658	0.79	-2.2
1,645,142	-		Atu1658	0.81	+0.3
1,645,192	+		Atu1658	0.84	-1.2
1,645,338	-				-0.7
1,645,456	-				-0.5
1,645,489	-				+0.8
1,645,489	-				+0.1
1,645,510	+				-0.4
1,645,510	+				+0.3
1,645,582	+		Atu1659	0.15	-0.3
1,645,612	+		Atu1659	0.19	+0.6
1,645,633	+		Atu1659	0.23	-0.2
1,645,674	-		Atu1659	0.29	-0.2
1,645,679	+		Atu1659	0.30	+0.1
1,645,687	-		Atu1659	0.31	-1.5
1,645,687	-		Atu1659	0.31	-0.2
1,645,790	+		Atu1659	0.47	-0.4
1,645,838	-		Atu1659	0.54	+0.4
1,645,850	+		Atu1659	0.56	-0.1
1,645,850	+		Atu1659	0.56	-0.0
1,645,850	+		Atu1659	0.56	+0.9
1,645,850	+		Atu1659	0.56	-1.2
1,645,850	+		Atu1659	0.56	+0.1
1,645,850	+		Atu1659	0.56	+0.2
1,645,858	-		Atu1659	0.57	-0.0
1,645,871	+		Atu1659	0.59	-0.9
1,645,977	-		Atu1659	0.75	-0.8
1,646,018	-		Atu1659	0.82	+0.8
1,646,062	-		Atu1659	0.88	-1.8
1,646,180	+				+0.9
1,646,188	-				-1.0
1,646,188	-				+0.4
1,646,220	-				-0.0
1,646,248	-				-0.4
1,646,299	-				-0.2
1,646,375	-		Atu1660	0.24	+1.3
1,646,481	+		Atu1660	0.44	-0.7