Strain Fitness in Agrobacterium fabrum C58 around Atu1446
Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Erythromycin 6.25 ug/mL |
---|---|---|---|---|---|
remove | |||||
1,438,302 | + | Atu1445 | 0.13 | +1.3 | |
1,438,366 | + | Atu1445 | 0.18 | -1.8 | |
1,438,366 | + | Atu1445 | 0.18 | +0.9 | |
1,438,436 | + | Atu1445 | 0.25 | +0.5 | |
1,438,696 | + | Atu1445 | 0.47 | -1.3 | |
1,438,701 | + | Atu1445 | 0.48 | -0.7 | |
1,438,790 | + | Atu1445 | 0.55 | -1.0 | |
1,438,819 | + | Atu1445 | 0.58 | +0.3 | |
1,439,042 | + | Atu1445 | 0.77 | +0.8 | |
1,439,069 | - | Atu1445 | 0.80 | -0.4 | |
1,439,133 | + | Atu1445 | 0.85 | +1.3 | |
1,439,283 | + | -1.1 | |||
1,439,347 | + | -0.0 | |||
1,439,347 | + | -0.4 | |||
1,439,366 | + | -0.0 | |||
1,439,486 | + | Atu1446 | 0.13 | +0.3 | |
1,439,897 | - | Atu1446 | 0.41 | +0.3 | |
1,440,104 | + | Atu1446 | 0.55 | -1.8 | |
1,440,337 | + | Atu1446 | 0.71 | -0.3 | |
1,440,659 | - | +0.7 | |||
1,440,734 | + | -0.3 | |||
1,440,855 | + | -2.1 | |||
1,440,863 | - | -0.7 | |||
1,441,684 | + | Atu1447 | 0.35 | -1.7 | |
1,441,684 | + | Atu1447 | 0.35 | -1.3 |
Or see this region's nucleotide sequence