Experiment: Erythromycin 6.25 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0576 and Atu0577 are separated by 34 nucleotides Atu0577 and Atu0578 overlap by 4 nucleotides Atu0578 and Atu0579 overlap by 10 nucleotides Atu0579 and Atu0580 are separated by 45 nucleotides
Atu0576: Atu0576 - flagellar hook-associated protein, at 561,720 to 562,823
Atu0576
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Atu0580: Atu0580 - flagellar biosynthetic protein, at 564,158 to 564,424
Atu0580
Position (kb) 562
563
564 Strain fitness (log2 ratio) -1
0
1
2
3 at 561.882 kb on - strand, within Atu0576 at 561.944 kb on + strand, within Atu0576 at 561.963 kb on + strand, within Atu0576 at 561.971 kb on - strand, within Atu0576 at 561.977 kb on + strand, within Atu0576 at 562.005 kb on + strand, within Atu0576 at 562.013 kb on - strand, within Atu0576 at 562.019 kb on + strand, within Atu0576 at 562.138 kb on + strand, within Atu0576 at 562.201 kb on + strand, within Atu0576 at 562.274 kb on + strand, within Atu0576 at 562.427 kb on - strand, within Atu0576 at 562.483 kb on + strand, within Atu0576 at 562.760 kb on + strand at 562.825 kb on - strand at 562.842 kb on + strand at 562.921 kb on + strand, within Atu0577 at 562.929 kb on - strand, within Atu0577 at 562.970 kb on + strand, within Atu0577 at 562.978 kb on - strand, within Atu0577 at 563.122 kb on + strand, within Atu0577 at 563.127 kb on + strand, within Atu0577 at 563.214 kb on - strand at 563.333 kb on + strand, within Atu0578 at 563.415 kb on + strand, within Atu0578 at 563.537 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579 at 563.863 kb on + strand, within Atu0579 at 563.874 kb on + strand, within Atu0579 at 563.881 kb on + strand, within Atu0579 at 563.888 kb on + strand, within Atu0579 at 564.113 kb on - strand at 564.160 kb on + strand at 564.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin 6.25 ug/mL remove 561,882 - Atu0576 0.15 +0.1 561,944 + Atu0576 0.20 -1.1 561,963 + Atu0576 0.22 -1.7 561,971 - Atu0576 0.23 -0.8 561,977 + Atu0576 0.23 -0.4 562,005 + Atu0576 0.26 -0.3 562,013 - Atu0576 0.27 -0.7 562,019 + Atu0576 0.27 +0.4 562,138 + Atu0576 0.38 -1.7 562,201 + Atu0576 0.44 +0.9 562,274 + Atu0576 0.50 -0.1 562,427 - Atu0576 0.64 -0.0 562,483 + Atu0576 0.69 +0.8 562,760 + -0.9 562,825 - -0.6 562,842 + +0.9 562,921 + Atu0577 0.18 +0.0 562,929 - Atu0577 0.21 -0.8 562,970 + Atu0577 0.32 -1.5 562,978 - Atu0577 0.35 -0.6 563,122 + Atu0577 0.77 -0.2 563,127 + Atu0577 0.78 -0.6 563,214 - +0.8 563,333 + Atu0578 0.30 +0.3 563,415 + Atu0578 0.48 -0.3 563,537 + Atu0578 0.75 +0.5 563,558 + Atu0578 0.80 +0.0 563,558 + Atu0578 0.80 +0.6 563,674 + -0.3 563,674 + -0.1 563,674 + +2.9 563,677 - +1.3 563,704 + Atu0579 0.14 +0.1 563,728 + Atu0579 0.19 -0.7 563,728 - Atu0579 0.19 +1.9 563,774 + Atu0579 0.28 -0.1 563,778 + Atu0579 0.29 +1.9 563,863 + Atu0579 0.47 +0.2 563,874 + Atu0579 0.50 -0.6 563,881 + Atu0579 0.51 +0.1 563,888 + Atu0579 0.53 +1.3 564,113 - +0.9 564,160 + +0.5 564,173 - +1.1
Or see this region's nucleotide sequence