Experiment: Bethi_Library_OD1.0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3444 and Atu3445 overlap by 8 nucleotides Atu3445 and Atu3446 are separated by 93 nucleotides
Atu3444: Atu3444 - oligopeptide ABC transporter substrate-binding protein, at 491,750 to 493,381
Atu3444
Atu3445: Atu3445 - hippurate hydrolase, at 493,374 to 494,573
Atu3445
Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836
Atu3446
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 492.429 kb on + strand, within Atu3444 at 492.442 kb on - strand, within Atu3444 at 492.458 kb on - strand, within Atu3444 at 492.471 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.575 kb on + strand, within Atu3444 at 492.581 kb on + strand, within Atu3444 at 492.754 kb on + strand, within Atu3444 at 492.892 kb on - strand, within Atu3444 at 492.955 kb on + strand, within Atu3444 at 492.979 kb on - strand, within Atu3444 at 492.997 kb on + strand, within Atu3444 at 493.040 kb on - strand, within Atu3444 at 493.042 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on - strand, within Atu3444 at 493.057 kb on - strand, within Atu3444 at 493.112 kb on - strand, within Atu3444 at 493.153 kb on + strand, within Atu3444 at 493.297 kb on + strand at 493.389 kb on - strand at 493.393 kb on + strand at 493.477 kb on + strand at 493.622 kb on - strand, within Atu3445 at 493.638 kb on + strand, within Atu3445 at 493.683 kb on + strand, within Atu3445 at 493.766 kb on - strand, within Atu3445 at 493.856 kb on + strand, within Atu3445 at 493.887 kb on - strand, within Atu3445 at 493.896 kb on - strand, within Atu3445 at 493.954 kb on + strand, within Atu3445 at 493.962 kb on - strand, within Atu3445 at 493.997 kb on + strand, within Atu3445 at 494.039 kb on + strand, within Atu3445 at 494.047 kb on - strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.135 kb on - strand, within Atu3445 at 494.207 kb on + strand, within Atu3445 at 494.225 kb on - strand, within Atu3445 at 494.230 kb on - strand, within Atu3445 at 494.244 kb on - strand, within Atu3445 at 494.271 kb on - strand, within Atu3445 at 494.374 kb on - strand, within Atu3445 at 494.429 kb on + strand, within Atu3445 at 494.436 kb on + strand, within Atu3445 at 494.479 kb on - strand at 494.507 kb on + strand at 494.665 kb on + strand at 494.856 kb on + strand, within Atu3446 at 494.893 kb on - strand, within Atu3446 at 495.018 kb on - strand, within Atu3446 at 495.062 kb on - strand, within Atu3446 at 495.259 kb on - strand, within Atu3446 at 495.264 kb on - strand, within Atu3446
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD1.0 remove 492,429 + Atu3444 0.42 +0.5 492,442 - Atu3444 0.42 +0.4 492,458 - Atu3444 0.43 +0.0 492,471 + Atu3444 0.44 -0.1 492,522 + Atu3444 0.47 +0.2 492,522 + Atu3444 0.47 +0.4 492,522 + Atu3444 0.47 -0.5 492,522 + Atu3444 0.47 -0.8 492,522 + Atu3444 0.47 -1.5 492,530 - Atu3444 0.48 -0.1 492,530 - Atu3444 0.48 +3.4 492,530 - Atu3444 0.48 -0.1 492,530 - Atu3444 0.48 +1.1 492,573 + Atu3444 0.50 -0.3 492,573 + Atu3444 0.50 +0.1 492,573 + Atu3444 0.50 -0.8 492,575 + Atu3444 0.51 -0.7 492,581 + Atu3444 0.51 -0.6 492,754 + Atu3444 0.62 -0.1 492,892 - Atu3444 0.70 -1.5 492,955 + Atu3444 0.74 +0.3 492,979 - Atu3444 0.75 -0.1 492,997 + Atu3444 0.76 +0.2 493,040 - Atu3444 0.79 -0.8 493,042 + Atu3444 0.79 -0.9 493,050 + Atu3444 0.80 +0.1 493,050 + Atu3444 0.80 -0.7 493,050 - Atu3444 0.80 +1.7 493,057 - Atu3444 0.80 -0.8 493,112 - Atu3444 0.83 +0.3 493,153 + Atu3444 0.86 -0.2 493,297 + -0.2 493,389 - +0.3 493,393 + -0.0 493,477 + -1.1 493,622 - Atu3445 0.21 +0.8 493,638 + Atu3445 0.22 +0.0 493,683 + Atu3445 0.26 +0.3 493,766 - Atu3445 0.33 -0.5 493,856 + Atu3445 0.40 -0.2 493,887 - Atu3445 0.43 -0.5 493,896 - Atu3445 0.43 -0.1 493,954 + Atu3445 0.48 -0.1 493,962 - Atu3445 0.49 -0.5 493,997 + Atu3445 0.52 -0.6 494,039 + Atu3445 0.55 +0.1 494,047 - Atu3445 0.56 -0.2 494,118 + Atu3445 0.62 -0.4 494,118 + Atu3445 0.62 -0.5 494,118 + Atu3445 0.62 -0.6 494,118 + Atu3445 0.62 +0.2 494,118 + Atu3445 0.62 +0.4 494,135 - Atu3445 0.63 -0.7 494,207 + Atu3445 0.69 -0.3 494,225 - Atu3445 0.71 -0.5 494,230 - Atu3445 0.71 +0.1 494,244 - Atu3445 0.72 -2.4 494,271 - Atu3445 0.75 -0.8 494,374 - Atu3445 0.83 -1.2 494,429 + Atu3445 0.88 -0.5 494,436 + Atu3445 0.89 -0.7 494,479 - -0.7 494,507 + +0.6 494,665 + -0.2 494,856 + Atu3446 0.16 -0.3 494,893 - Atu3446 0.19 +1.1 495,018 - Atu3446 0.30 -0.8 495,062 - Atu3446 0.34 +0.2 495,259 - Atu3446 0.51 +0.8 495,264 - Atu3446 0.51 +0.1
Or see this region's nucleotide sequence