Strain Fitness in Agrobacterium fabrum C58 around Atu5021

Experiment: Bethi_Library_OD1.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5020 and Atu5021 overlap by 4 nucleotidesAtu5021 and Atu5022 overlap by 1 nucleotides Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335 Atu5020 Atu5021: Atu5021 - hypothetical protein, at 21,332 to 22,228 Atu5021 Atu5022: Atu5022 - hypothetical protein, at 22,228 to 24,126 Atu5022 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.344 kb on + strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.352 kb on - strand, within Atu5020at 20.403 kb on - strand, within Atu5020at 20.428 kb on + strand, within Atu5020at 20.429 kb on - strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.440 kb on + strand, within Atu5020at 20.477 kb on + strand, within Atu5020at 20.485 kb on - strand, within Atu5020at 20.485 kb on - strand, within Atu5020at 20.499 kb on - strand, within Atu5020at 20.523 kb on - strand, within Atu5020at 20.538 kb on + strand, within Atu5020at 20.546 kb on - strand, within Atu5020at 20.546 kb on - strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.637 kb on + strand, within Atu5020at 20.652 kb on + strand, within Atu5020at 20.660 kb on - strand, within Atu5020at 20.675 kb on + strand, within Atu5020at 20.683 kb on - strand, within Atu5020at 20.683 kb on - strand, within Atu5020at 20.694 kb on + strand, within Atu5020at 20.714 kb on + strand, within Atu5020at 20.722 kb on + strand, within Atu5020at 20.722 kb on - strand, within Atu5020at 20.724 kb on + strand, within Atu5020at 20.811 kb on - strand, within Atu5020at 20.823 kb on + strand, within Atu5020at 20.831 kb on - strand, within Atu5020at 20.832 kb on - strand, within Atu5020at 20.863 kb on + strand, within Atu5020at 20.883 kb on - strand, within Atu5020at 20.889 kb on + strand, within Atu5020at 20.895 kb on - strand, within Atu5020at 20.941 kb on - strand, within Atu5020at 20.969 kb on + strand, within Atu5020at 21.064 kb on - strand, within Atu5020at 21.171 kb on + strand, within Atu5020at 21.173 kb on - strand, within Atu5020at 21.193 kb on - strand, within Atu5020at 21.230 kb on + strandat 21.233 kb on - strandat 21.250 kb on + strandat 21.308 kb on + strandat 21.313 kb on + strandat 21.316 kb on - strandat 21.316 kb on - strandat 21.410 kb on + strandat 21.418 kb on - strandat 21.434 kb on - strand, within Atu5021at 21.458 kb on - strand, within Atu5021at 21.497 kb on + strand, within Atu5021at 21.507 kb on + strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.557 kb on - strand, within Atu5021at 21.619 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.684 kb on - strand, within Atu5021at 21.707 kb on + strand, within Atu5021at 21.725 kb on - strand, within Atu5021at 21.766 kb on - strand, within Atu5021at 21.843 kb on - strand, within Atu5021at 21.879 kb on - strand, within Atu5021at 22.128 kb on - strand, within Atu5021at 22.130 kb on - strand, within Atu5021at 22.167 kb on + strandat 22.252 kb on + strandat 22.252 kb on + strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.275 kb on + strandat 22.281 kb on + strandat 22.299 kb on + strandat 22.299 kb on + strandat 22.321 kb on + strandat 22.332 kb on + strandat 22.332 kb on + strandat 22.340 kb on - strandat 22.340 kb on - strandat 22.340 kb on - strandat 22.357 kb on + strandat 22.367 kb on + strandat 22.418 kb on - strand, within Atu5022at 22.440 kb on - strand, within Atu5022at 22.454 kb on - strand, within Atu5022at 22.486 kb on - strand, within Atu5022at 22.521 kb on + strand, within Atu5022at 22.521 kb on + strand, within Atu5022at 22.529 kb on - strand, within Atu5022at 22.529 kb on - strand, within Atu5022at 22.534 kb on - strand, within Atu5022at 22.618 kb on - strand, within Atu5022at 22.638 kb on + strand, within Atu5022at 22.638 kb on + strand, within Atu5022at 22.670 kb on + strand, within Atu5022at 22.673 kb on + strand, within Atu5022at 22.680 kb on + strand, within Atu5022at 22.680 kb on + strand, within Atu5022at 22.715 kb on - strand, within Atu5022at 22.717 kb on + strand, within Atu5022at 22.736 kb on - strand, within Atu5022at 22.736 kb on - strand, within Atu5022at 22.777 kb on + strand, within Atu5022at 22.815 kb on + strand, within Atu5022at 22.838 kb on + strand, within Atu5022at 22.846 kb on - strand, within Atu5022at 22.992 kb on + strand, within Atu5022at 23.003 kb on + strand, within Atu5022at 23.058 kb on + strand, within Atu5022at 23.058 kb on + strand, within Atu5022at 23.066 kb on - strand, within Atu5022at 23.066 kb on - strand, within Atu5022at 23.106 kb on + strand, within Atu5022at 23.120 kb on + strand, within Atu5022at 23.151 kb on + strand, within Atu5022at 23.151 kb on + strand, within Atu5022at 23.222 kb on + strand, within Atu5022at 23.225 kb on - strand, within Atu5022at 23.225 kb on - strand, within Atu5022at 23.228 kb on + strand, within Atu5022

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD1.0
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20,344 + Atu5020 0.26 -0.3
20,344 + Atu5020 0.26 -0.2
20,344 + Atu5020 0.26 -0.1
20,344 + Atu5020 0.26 -0.4
20,352 - Atu5020 0.26 +0.0
20,352 - Atu5020 0.26 +0.4
20,352 - Atu5020 0.26 +0.3
20,403 - Atu5020 0.30 -0.4
20,428 + Atu5020 0.32 -0.2
20,429 - Atu5020 0.32 -0.6
20,440 + Atu5020 0.33 -0.2
20,440 + Atu5020 0.33 +0.2
20,440 + Atu5020 0.33 -0.4
20,440 + Atu5020 0.33 +0.7
20,477 + Atu5020 0.36 -0.6
20,485 - Atu5020 0.36 +1.9
20,485 - Atu5020 0.36 -0.2
20,499 - Atu5020 0.37 +0.4
20,523 - Atu5020 0.39 +1.0
20,538 + Atu5020 0.40 +0.4
20,546 - Atu5020 0.41 +0.9
20,546 - Atu5020 0.41 +1.1
20,637 + Atu5020 0.48 +0.1
20,637 + Atu5020 0.48 -0.3
20,637 + Atu5020 0.48 +0.6
20,652 + Atu5020 0.49 +0.6
20,660 - Atu5020 0.49 -0.1
20,675 + Atu5020 0.50 -0.7
20,683 - Atu5020 0.51 +0.7
20,683 - Atu5020 0.51 +0.4
20,694 + Atu5020 0.52 -0.2
20,714 + Atu5020 0.53 +2.3
20,722 + Atu5020 0.54 +0.1
20,722 - Atu5020 0.54 +0.7
20,724 + Atu5020 0.54 -0.6
20,811 - Atu5020 0.61 -0.7
20,823 + Atu5020 0.62 -0.2
20,831 - Atu5020 0.62 -1.2
20,832 - Atu5020 0.62 -0.4
20,863 + Atu5020 0.65 +0.4
20,883 - Atu5020 0.66 -1.0
20,889 + Atu5020 0.67 +0.9
20,895 - Atu5020 0.67 -0.5
20,941 - Atu5020 0.70 -0.4
20,969 + Atu5020 0.73 +0.7
21,064 - Atu5020 0.80 +0.9
21,171 + Atu5020 0.88 +0.7
21,173 - Atu5020 0.88 +1.3
21,193 - Atu5020 0.89 +0.4
21,230 + +0.6
21,233 - -0.2
21,250 + -0.3
21,308 + +0.4
21,313 + -0.0
21,316 - -0.9
21,316 - -0.3
21,410 + -0.8
21,418 - -0.3
21,434 - Atu5021 0.11 -0.9
21,458 - Atu5021 0.14 -0.3
21,497 + Atu5021 0.18 +0.2
21,507 + Atu5021 0.20 -0.8
21,520 - Atu5021 0.21 +0.9
21,520 - Atu5021 0.21 -0.1
21,557 - Atu5021 0.25 +0.3
21,619 + Atu5021 0.32 -0.4
21,652 + Atu5021 0.36 -0.8
21,652 + Atu5021 0.36 -0.5
21,652 + Atu5021 0.36 -1.1
21,652 + Atu5021 0.36 -0.5
21,660 - Atu5021 0.37 -0.8
21,660 - Atu5021 0.37 -0.4
21,684 - Atu5021 0.39 -0.6
21,707 + Atu5021 0.42 -0.3
21,725 - Atu5021 0.44 -1.8
21,766 - Atu5021 0.48 +0.1
21,843 - Atu5021 0.57 -0.2
21,879 - Atu5021 0.61 +0.1
22,128 - Atu5021 0.89 -0.5
22,130 - Atu5021 0.89 +0.1
22,167 + -0.2
22,252 + -0.1
22,252 + -0.3
22,260 - +0.1
22,260 - +0.4
22,260 - +0.4
22,260 - -1.1
22,275 + -0.0
22,281 + +1.1
22,299 + -0.0
22,299 + +0.4
22,321 + +0.7
22,332 + -1.7
22,332 + +0.3
22,340 - -0.2
22,340 - +1.1
22,340 - -0.6
22,357 + -0.3
22,367 + +0.2
22,418 - Atu5022 0.10 -0.1
22,440 - Atu5022 0.11 -0.5
22,454 - Atu5022 0.12 +0.1
22,486 - Atu5022 0.14 +1.0
22,521 + Atu5022 0.15 -0.5
22,521 + Atu5022 0.15 +0.1
22,529 - Atu5022 0.16 +0.0
22,529 - Atu5022 0.16 +0.1
22,534 - Atu5022 0.16 +1.7
22,618 - Atu5022 0.21 -0.0
22,638 + Atu5022 0.22 -0.8
22,638 + Atu5022 0.22 +0.7
22,670 + Atu5022 0.23 +0.8
22,673 + Atu5022 0.23 +2.7
22,680 + Atu5022 0.24 +0.5
22,680 + Atu5022 0.24 +0.6
22,715 - Atu5022 0.26 -0.1
22,717 + Atu5022 0.26 -0.3
22,736 - Atu5022 0.27 +1.7
22,736 - Atu5022 0.27 +0.0
22,777 + Atu5022 0.29 -2.4
22,815 + Atu5022 0.31 -0.2
22,838 + Atu5022 0.32 +0.3
22,846 - Atu5022 0.33 -0.3
22,992 + Atu5022 0.40 -0.1
23,003 + Atu5022 0.41 +0.1
23,058 + Atu5022 0.44 +1.2
23,058 + Atu5022 0.44 -0.6
23,066 - Atu5022 0.44 -0.1
23,066 - Atu5022 0.44 -0.2
23,106 + Atu5022 0.46 -0.3
23,120 + Atu5022 0.47 +0.4
23,151 + Atu5022 0.49 +0.0
23,151 + Atu5022 0.49 -0.1
23,222 + Atu5022 0.52 -0.5
23,225 - Atu5022 0.53 -0.6
23,225 - Atu5022 0.53 +0.7
23,228 + Atu5022 0.53 -0.9

Or see this region's nucleotide sequence