Strain Fitness in Agrobacterium fabrum C58 around Atu4146

Experiment: Bethi_Library_OD1.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD1.0
1,261,460	+		Atu4144	0.89	-0.1
1,261,468	-				+0.7
1,261,516	-				+0.6
1,261,548	-				-0.3
1,261,665	-		Atu4145	0.16	-0.0
1,261,711	-		Atu4145	0.21	-1.7
1,261,753	+		Atu4145	0.27	-0.6
1,261,761	-		Atu4145	0.28	-0.4
1,261,827	+		Atu4145	0.36	+0.4
1,261,835	+		Atu4145	0.36	-0.2
1,261,835	+		Atu4145	0.36	+0.5
1,261,850	+		Atu4145	0.38	+1.1
1,261,979	+		Atu4145	0.54	-0.1
1,261,987	-		Atu4145	0.55	-0.1
1,262,091	-		Atu4145	0.68	-0.4
1,262,091	-		Atu4145	0.68	-1.5
1,262,146	-		Atu4145	0.74	-0.6
1,262,146	-		Atu4145	0.74	-0.2
1,262,179	+		Atu4145	0.78	-1.9
1,262,264	+		Atu4145	0.88	+0.6
1,262,368	+				-0.1
1,262,413	-				+0.5
1,262,425	+				+0.1
1,262,449	+				-0.1
1,262,449	+				-0.0
1,262,452	-				-0.2
1,262,516	+				-0.2
1,262,572	+		Atu4146	0.11	+0.0
1,262,730	+		Atu4146	0.20	-0.3
1,262,730	+		Atu4146	0.20	+0.2
1,262,950	+		Atu4146	0.32	-0.5
1,262,950	+		Atu4146	0.32	+2.3
1,262,950	+		Atu4146	0.32	-0.3
1,262,958	-		Atu4146	0.32	+0.4
1,262,958	-		Atu4146	0.32	+0.8
1,262,958	-		Atu4146	0.32	+0.3
1,262,958	-		Atu4146	0.32	+1.3
1,262,958	-		Atu4146	0.32	-0.3
1,262,968	-		Atu4146	0.32	+0.2
1,262,994	+		Atu4146	0.34	+0.3
1,263,046	-		Atu4146	0.37	+1.5
1,263,080	-		Atu4146	0.38	+0.5
1,263,165	+		Atu4146	0.43	-0.2
1,263,172	-		Atu4146	0.43	-0.7
1,263,182	+		Atu4146	0.44	+0.0
1,263,263	+		Atu4146	0.48	+0.1
1,263,412	-		Atu4146	0.56	+0.1
1,263,412	-		Atu4146	0.56	+0.4
1,263,414	+		Atu4146	0.56	+1.1
1,263,422	-		Atu4146	0.57	-0.5
1,263,426	+		Atu4146	0.57	+0.3
1,263,426	+		Atu4146	0.57	-0.7
1,263,426	+		Atu4146	0.57	-1.4
1,263,426	+		Atu4146	0.57	+1.4
1,263,426	+		Atu4146	0.57	+1.8
1,263,426	+		Atu4146	0.57	-2.9
1,263,426	+		Atu4146	0.57	-0.7
1,263,426	+		Atu4146	0.57	-0.5
1,263,426	+		Atu4146	0.57	+0.4
1,263,426	+		Atu4146	0.57	+0.9
1,263,426	+		Atu4146	0.57	-0.4
1,263,426	+		Atu4146	0.57	-0.1
1,263,426	+		Atu4146	0.57	+0.2
1,263,433	+		Atu4146	0.57	+0.2
1,263,433	+		Atu4146	0.57	-0.2
1,263,433	+		Atu4146	0.57	+0.6
1,263,433	+		Atu4146	0.57	+1.1
1,263,434	-		Atu4146	0.57	-0.0
1,263,434	-		Atu4146	0.57	-0.4
1,263,434	-		Atu4146	0.57	-0.8
1,263,434	-		Atu4146	0.57	+0.4
1,263,434	-		Atu4146	0.57	+0.3
1,263,434	-		Atu4146	0.57	+0.4
1,263,434	-		Atu4146	0.57	-0.7
1,263,434	-		Atu4146	0.57	-0.8
1,263,434	-		Atu4146	0.57	+0.9
1,263,434	-		Atu4146	0.57	+1.0
1,263,434	-		Atu4146	0.57	-0.4
1,263,434	-		Atu4146	0.57	+0.5
1,263,441	-		Atu4146	0.58	-0.3
1,263,441	-		Atu4146	0.58	+0.6
1,263,441	-		Atu4146	0.58	+1.2
1,263,529	+		Atu4146	0.62	+0.1
1,263,618	+		Atu4146	0.67	+0.9
1,263,672	-		Atu4146	0.70	-0.8
1,263,696	-		Atu4146	0.71	-1.2
1,263,702	+		Atu4146	0.72	+2.5
1,263,733	+		Atu4146	0.73	+0.1
1,263,741	-		Atu4146	0.74	+1.9
1,263,743	+		Atu4146	0.74	-0.2
1,263,803	+		Atu4146	0.77	+0.2
1,263,873	+		Atu4146	0.81	-1.2
1,263,997	+		Atu4146	0.87	-0.3
1,264,050	-				-0.3
1,264,211	-				+2.1
1,264,227	+				-1.1
1,264,231	-				-0.8
1,264,311	-				+0.2
1,264,311	-				-2.1
1,264,349	+				-0.1
1,264,364	+		Atu4147	0.11	+0.4
1,264,372	-		Atu4147	0.12	-1.1
1,264,394	-		Atu4147	0.14	-0.3
1,264,404	-		Atu4147	0.15	+1.5
1,264,516	-		Atu4147	0.26	-0.7
1,264,551	+		Atu4147	0.29	+0.1
1,264,559	-		Atu4147	0.30	-0.6
1,264,655	-		Atu4147	0.39	+1.9
1,264,751	-		Atu4147	0.48	-0.3
1,264,767	+		Atu4147	0.50	-0.5
1,264,773	-		Atu4147	0.50	+0.8
1,264,775	+		Atu4147	0.51	+0.2
1,264,850	+		Atu4147	0.58	+0.5
1,264,939	-		Atu4147	0.66	+2.5
1,264,948	+		Atu4147	0.67	+0.3
1,264,977	+		Atu4147	0.70	-0.2
1,265,116	-		Atu4147	0.83	-1.4
1,265,221	+				-0.1
1,265,233	-				-0.5