Strain Fitness in Agrobacterium fabrum C58 around Atu2391

Experiment: Bethi_Library_OD1.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD1.0
2,360,247	-		Atu2389	0.88	+0.8
2,360,252	-		Atu2389	0.89	+0.3
2,360,254	+		Atu2389	0.89	+1.4
2,360,330	-				+0.1
2,360,394	+				+0.7
2,360,466	+		Atu2390	0.14	-0.8
2,360,472	-		Atu2390	0.14	+0.6
2,360,644	+		Atu2390	0.34	-0.3
2,360,644	+		Atu2390	0.34	+0.2
2,360,649	+		Atu2390	0.35	+0.3
2,360,657	-		Atu2390	0.36	-0.1
2,360,657	-		Atu2390	0.36	-0.1
2,360,657	-		Atu2390	0.36	+0.7
2,360,764	-		Atu2390	0.48	-0.2
2,360,769	-		Atu2390	0.48	-0.9
2,360,779	-		Atu2390	0.50	+0.9
2,360,849	+		Atu2390	0.58	-0.4
2,360,849	+		Atu2390	0.58	+0.0
2,360,857	-		Atu2390	0.59	-0.4
2,360,857	-		Atu2390	0.59	-0.0
2,360,859	+		Atu2390	0.59	-0.0
2,360,859	+		Atu2390	0.59	+0.0
2,360,859	+		Atu2390	0.59	-0.8
2,360,867	-		Atu2390	0.60	+0.9
2,360,867	-		Atu2390	0.60	-0.2
2,360,891	-		Atu2390	0.62	+0.3
2,360,925	+		Atu2390	0.66	-0.9
2,360,992	+		Atu2390	0.74	-0.5
2,361,000	-		Atu2390	0.75	+0.2
2,361,159	-				+1.4
2,361,163	-				+0.4
2,361,259	+				-0.6
2,361,264	-				-0.3
2,361,290	-				+0.4
2,361,290	-				-0.2
2,361,341	-		Atu2391	0.10	-0.7
2,361,461	-		Atu2391	0.22	-0.1
2,361,476	-		Atu2391	0.24	+0.2
2,361,477	-		Atu2391	0.24	-1.1
2,361,488	-		Atu2391	0.25	-1.1
2,361,533	+		Atu2391	0.30	-0.1
2,361,621	+		Atu2391	0.38	+0.4
2,361,715	+		Atu2391	0.48	-1.1
2,361,715	+		Atu2391	0.48	-0.6
2,361,723	-		Atu2391	0.49	-0.8
2,361,890	+		Atu2391	0.65	+0.2
2,361,936	+		Atu2391	0.70	-0.4
2,361,968	+		Atu2391	0.73	-0.1
2,361,968	+		Atu2391	0.73	-0.9
2,361,977	-		Atu2391	0.74	+1.4
2,362,085	+		Atu2391	0.85	-0.6
2,362,146	-				-1.7
2,362,247	+				-0.1
2,362,281	+				+0.2
2,362,292	+				-0.0
2,362,302	-				-1.1
2,362,329	+				-0.7
2,362,334	+				+0.3
2,362,334	+				-0.6
2,362,349	-				+0.9
2,362,390	+				-0.4
2,362,392	-				-0.1
2,362,423	-				-1.7
2,362,496	+				-0.8
2,362,512	-				-0.9
2,362,674	+				+0.3
2,362,683	-				+0.4
2,362,830	+				-0.3
2,363,182	-		Atu2392	0.29	+0.6
2,363,194	-		Atu2392	0.30	-0.1
2,363,203	-		Atu2392	0.31	+1.4
2,363,204	-		Atu2392	0.31	+1.0
2,363,214	-		Atu2392	0.32	-0.2
2,363,214	-		Atu2392	0.32	+0.5
2,363,214	-		Atu2392	0.32	+0.2
2,363,214	-		Atu2392	0.32	+2.0
2,363,214	-		Atu2392	0.32	+0.6
2,363,214	-		Atu2392	0.32	+0.2
2,363,214	-		Atu2392	0.32	-0.3
2,363,214	-		Atu2392	0.32	+0.1
2,363,214	-		Atu2392	0.32	-0.6
2,363,216	-		Atu2392	0.32	+0.4