Strain Fitness in Agrobacterium fabrum C58 around Atu5411

Experiment: Bethi_Library_OD1.0

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5410 and Atu5411 are separated by 19 nucleotidesAtu5411 and Atu5412 are separated by 9 nucleotidesAtu5412 and Atu5413 overlap by 8 nucleotides Atu5410: Atu5410 - ABC transporter nucleotide binding/ATPase, at 405,297 to 406,412 Atu5410 Atu5411: Atu5411 - ABC transporter substrate binding protein, at 406,432 to 407,472 Atu5411 Atu5412: Atu5412 - ABC transporter membrane spanning protein, at 407,482 to 408,309 Atu5412 Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123 Atu5413 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2at 405.433 kb on - strand, within Atu5410at 405.474 kb on + strand, within Atu5410at 405.496 kb on + strand, within Atu5410at 405.506 kb on + strand, within Atu5410at 405.521 kb on - strand, within Atu5410at 405.539 kb on - strand, within Atu5410at 405.590 kb on - strand, within Atu5410at 405.697 kb on - strand, within Atu5410at 405.697 kb on - strand, within Atu5410at 405.703 kb on + strand, within Atu5410at 405.745 kb on - strand, within Atu5410at 405.753 kb on - strand, within Atu5410at 405.758 kb on - strand, within Atu5410at 405.758 kb on - strand, within Atu5410at 405.776 kb on + strand, within Atu5410at 405.810 kb on + strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.818 kb on - strand, within Atu5410at 405.887 kb on + strand, within Atu5410at 405.901 kb on + strand, within Atu5410at 405.917 kb on + strand, within Atu5410at 405.999 kb on + strand, within Atu5410at 406.026 kb on + strand, within Atu5410at 406.039 kb on - strand, within Atu5410at 406.046 kb on - strand, within Atu5410at 406.168 kb on + strand, within Atu5410at 406.186 kb on + strand, within Atu5410at 406.192 kb on - strand, within Atu5410at 406.226 kb on - strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.243 kb on + strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.251 kb on - strand, within Atu5410at 406.279 kb on + strand, within Atu5410at 406.302 kb on - strandat 406.339 kb on - strandat 406.344 kb on - strandat 406.363 kb on - strandat 406.378 kb on - strandat 406.398 kb on - strandat 406.416 kb on + strandat 406.416 kb on + strandat 406.421 kb on + strandat 406.429 kb on - strandat 406.532 kb on - strandat 406.535 kb on - strandat 406.572 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.582 kb on + strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.590 kb on - strand, within Atu5411at 406.596 kb on + strand, within Atu5411at 406.603 kb on - strand, within Atu5411at 406.603 kb on - strand, within Atu5411at 406.610 kb on + strand, within Atu5411at 406.647 kb on - strand, within Atu5411at 406.659 kb on + strand, within Atu5411at 406.667 kb on - strand, within Atu5411at 406.706 kb on + strand, within Atu5411at 406.759 kb on - strand, within Atu5411at 406.831 kb on + strand, within Atu5411at 406.844 kb on - strand, within Atu5411at 406.871 kb on - strand, within Atu5411at 406.886 kb on - strand, within Atu5411at 406.908 kb on + strand, within Atu5411at 406.915 kb on + strand, within Atu5411at 407.025 kb on + strand, within Atu5411at 407.025 kb on + strand, within Atu5411at 407.033 kb on - strand, within Atu5411at 407.033 kb on - strand, within Atu5411at 407.046 kb on + strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.054 kb on - strand, within Atu5411at 407.078 kb on + strand, within Atu5411at 407.079 kb on + strand, within Atu5411at 407.220 kb on + strand, within Atu5411at 407.256 kb on - strand, within Atu5411at 407.274 kb on + strand, within Atu5411at 407.380 kb on + strandat 407.416 kb on - strandat 407.467 kb on + strandat 407.472 kb on + strandat 407.480 kb on - strandat 407.575 kb on - strand, within Atu5412at 407.581 kb on - strand, within Atu5412at 407.591 kb on + strand, within Atu5412at 407.657 kb on + strand, within Atu5412at 407.657 kb on - strand, within Atu5412at 407.665 kb on - strand, within Atu5412at 407.679 kb on - strand, within Atu5412at 407.692 kb on + strand, within Atu5412at 407.702 kb on + strand, within Atu5412at 407.726 kb on - strand, within Atu5412at 407.726 kb on - strand, within Atu5412at 407.840 kb on - strand, within Atu5412at 407.862 kb on - strand, within Atu5412at 407.871 kb on + strand, within Atu5412at 407.983 kb on + strand, within Atu5412at 408.002 kb on - strand, within Atu5412at 408.056 kb on - strand, within Atu5412at 408.069 kb on - strand, within Atu5412at 408.073 kb on - strand, within Atu5412at 408.088 kb on + strand, within Atu5412at 408.224 kb on + strand, within Atu5412at 408.232 kb on - strandat 408.232 kb on - strandat 408.232 kb on - strandat 408.340 kb on + strandat 408.369 kb on + strandat 408.369 kb on + strandat 408.374 kb on + strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.377 kb on - strandat 408.429 kb on - strand, within Atu5413

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD1.0
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405,433 - Atu5410 0.12 +1.1
405,474 + Atu5410 0.16 +0.2
405,496 + Atu5410 0.18 -0.9
405,506 + Atu5410 0.19 -0.1
405,521 - Atu5410 0.20 +1.5
405,539 - Atu5410 0.22 +0.3
405,590 - Atu5410 0.26 +0.4
405,697 - Atu5410 0.36 +2.5
405,697 - Atu5410 0.36 +0.5
405,703 + Atu5410 0.36 +0.4
405,745 - Atu5410 0.40 +0.7
405,753 - Atu5410 0.41 -0.6
405,758 - Atu5410 0.41 -0.1
405,758 - Atu5410 0.41 +0.9
405,776 + Atu5410 0.43 +0.5
405,810 + Atu5410 0.46 +0.7
405,818 - Atu5410 0.47 -0.0
405,818 - Atu5410 0.47 +0.1
405,818 - Atu5410 0.47 -0.3
405,818 - Atu5410 0.47 +1.0
405,818 - Atu5410 0.47 -0.1
405,887 + Atu5410 0.53 +0.2
405,901 + Atu5410 0.54 -0.0
405,917 + Atu5410 0.56 -0.5
405,999 + Atu5410 0.63 -0.6
406,026 + Atu5410 0.65 +0.1
406,039 - Atu5410 0.66 -1.8
406,046 - Atu5410 0.67 -0.6
406,168 + Atu5410 0.78 -0.3
406,186 + Atu5410 0.80 -1.7
406,192 - Atu5410 0.80 +0.7
406,226 - Atu5410 0.83 +0.1
406,243 + Atu5410 0.85 +0.2
406,243 + Atu5410 0.85 -0.3
406,243 + Atu5410 0.85 +0.1
406,251 - Atu5410 0.85 +0.1
406,251 - Atu5410 0.85 -0.3
406,251 - Atu5410 0.85 -0.0
406,251 - Atu5410 0.85 +0.7
406,279 + Atu5410 0.88 +0.2
406,302 - +0.3
406,339 - -0.9
406,344 - +0.9
406,363 - +0.3
406,378 - +0.3
406,398 - -0.8
406,416 + +0.0
406,416 + +0.1
406,421 + +0.4
406,429 - -0.3
406,532 - +0.0
406,535 - -0.1
406,572 + Atu5411 0.13 -0.2
406,582 + Atu5411 0.14 +0.6
406,582 + Atu5411 0.14 -0.4
406,582 + Atu5411 0.14 -0.2
406,582 + Atu5411 0.14 -0.8
406,582 + Atu5411 0.14 -0.7
406,582 + Atu5411 0.14 +0.2
406,590 - Atu5411 0.15 -0.5
406,590 - Atu5411 0.15 -1.5
406,590 - Atu5411 0.15 -0.1
406,590 - Atu5411 0.15 -1.8
406,590 - Atu5411 0.15 -0.2
406,596 + Atu5411 0.16 -0.5
406,603 - Atu5411 0.16 -1.0
406,603 - Atu5411 0.16 +0.6
406,610 + Atu5411 0.17 +0.6
406,647 - Atu5411 0.21 -0.0
406,659 + Atu5411 0.22 +0.2
406,667 - Atu5411 0.23 +0.0
406,706 + Atu5411 0.26 -0.3
406,759 - Atu5411 0.31 -0.3
406,831 + Atu5411 0.38 -0.3
406,844 - Atu5411 0.40 -1.3
406,871 - Atu5411 0.42 -0.5
406,886 - Atu5411 0.44 -0.7
406,908 + Atu5411 0.46 +0.6
406,915 + Atu5411 0.46 +0.2
407,025 + Atu5411 0.57 -0.9
407,025 + Atu5411 0.57 -0.1
407,033 - Atu5411 0.58 +0.2
407,033 - Atu5411 0.58 -1.2
407,046 + Atu5411 0.59 +0.5
407,054 - Atu5411 0.60 -0.8
407,054 - Atu5411 0.60 +0.3
407,054 - Atu5411 0.60 -0.3
407,078 + Atu5411 0.62 -0.6
407,079 + Atu5411 0.62 -0.5
407,220 + Atu5411 0.76 -0.4
407,256 - Atu5411 0.79 -0.1
407,274 + Atu5411 0.81 -0.5
407,380 + +0.3
407,416 - -0.6
407,467 + -0.5
407,472 + -0.5
407,480 - -0.1
407,575 - Atu5412 0.11 +1.0
407,581 - Atu5412 0.12 -0.3
407,591 + Atu5412 0.13 +0.0
407,657 + Atu5412 0.21 +0.2
407,657 - Atu5412 0.21 +0.5
407,665 - Atu5412 0.22 -1.0
407,679 - Atu5412 0.24 -0.4
407,692 + Atu5412 0.25 -0.1
407,702 + Atu5412 0.27 -0.3
407,726 - Atu5412 0.29 +1.0
407,726 - Atu5412 0.29 +0.1
407,840 - Atu5412 0.43 +0.3
407,862 - Atu5412 0.46 +0.6
407,871 + Atu5412 0.47 +0.5
407,983 + Atu5412 0.61 -2.0
408,002 - Atu5412 0.63 +2.1
408,056 - Atu5412 0.69 -0.5
408,069 - Atu5412 0.71 -0.4
408,073 - Atu5412 0.71 -0.2
408,088 + Atu5412 0.73 -1.2
408,224 + Atu5412 0.90 +0.2
408,232 - +0.0
408,232 - +0.4
408,232 - +0.3
408,340 + -0.6
408,369 + +0.5
408,369 + -0.5
408,374 + +1.2
408,377 - +0.1
408,377 - -0.0
408,377 - +0.4
408,377 - -0.0
408,429 - Atu5413 0.15 -0.0

Or see this region's nucleotide sequence