Strain Fitness in Agrobacterium fabrum C58 around Atu1920

Experiment: Bethi_Library_OD1.0

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD1.0
1,897,615	+				-1.3
1,897,732	-		Atu1919	0.12	+0.3
1,897,816	+		Atu1919	0.21	+0.9
1,897,850	+		Atu1919	0.24	-0.5
1,897,894	-		Atu1919	0.29	-1.5
1,897,895	-		Atu1919	0.29	-0.4
1,897,907	-		Atu1919	0.30	-1.4
1,897,916	-		Atu1919	0.31	+0.3
1,898,015	+		Atu1919	0.42	+0.3
1,898,015	+		Atu1919	0.42	+0.7
1,898,148	+		Atu1919	0.56	-0.7
1,898,156	-		Atu1919	0.57	-0.7
1,898,168	-		Atu1919	0.58	-0.3
1,898,191	+		Atu1919	0.61	-1.2
1,898,251	+		Atu1919	0.67	-0.5
1,898,274	-		Atu1919	0.69	+0.5
1,898,420	+		Atu1919	0.85	+0.9
1,898,486	+				-1.0
1,898,499	+				+0.6
1,898,526	+				+1.3
1,898,526	+				-0.6
1,898,534	-				+0.3
1,898,534	-				+0.2
1,898,534	-				+0.9
1,898,534	-				-0.0
1,898,534	-				+0.0
1,898,594	+				+0.7
1,898,594	+				+0.0
1,898,602	-				+0.7
1,898,613	+				+0.5
1,898,655	-		Atu1920	0.14	+2.3
1,898,739	-		Atu1920	0.27	-0.7
1,898,752	+		Atu1920	0.29	-0.6
1,898,762	+		Atu1920	0.30	-2.5
1,898,830	-		Atu1920	0.41	+0.4
1,898,886	+		Atu1920	0.50	-0.4
1,898,924	+		Atu1920	0.55	-0.9
1,898,932	-		Atu1920	0.57	-0.1
1,898,980	-		Atu1920	0.64	-1.2
1,899,038	+		Atu1920	0.73	-0.7
1,899,051	-		Atu1920	0.75	-2.0
1,899,206	+				+0.6
1,899,378	+				+0.5
1,899,386	-				+0.6
1,899,386	-				-0.4
1,899,430	-				+1.3
1,899,631	+				-0.0
1,899,649	+				+0.1
1,899,667	+				-2.1
1,899,699	-				+0.8
1,899,723	-				+0.1
1,899,726	-				+0.2
1,899,931	-		Atu1921	0.32	+0.0
1,899,955	-		Atu1921	0.35	-0.0
1,900,009	+		Atu1921	0.41	-0.1
1,900,022	-		Atu1921	0.42	-0.7
1,900,080	-		Atu1921	0.49	-0.2
1,900,121	+		Atu1921	0.54	+0.3