Strain Fitness in Agrobacterium fabrum C58 around Atu6176

Experiment: Bethi_Library_OD0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6174 and Atu6175 overlap by 4 nucleotidesAtu6175 and Atu6176 overlap by 4 nucleotidesAtu6176 and Atu6177 are separated by 40 nucleotides Atu6174: Atu6174 - component of type IV secretion system, at 189,531 to 190,244 Atu6174 Atu6175: Atu6175 - component of type IV secretion system, at 190,241 to 191,122 Atu6175 Atu6176: Atu6176 - component of type IV secretion system, at 191,119 to 192,252 Atu6176 Atu6177: Atu6177 - component of type IV secretion system, at 192,293 to 193,327 Atu6177 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.119 kb on - strand, within Atu6174at 190.153 kb on + strand, within Atu6174at 190.161 kb on - strand, within Atu6174at 190.171 kb on - strand, within Atu6174at 190.189 kb on + strandat 190.201 kb on + strandat 190.222 kb on + strandat 190.279 kb on - strandat 190.307 kb on - strandat 190.321 kb on + strandat 190.326 kb on + strandat 190.326 kb on + strandat 190.329 kb on - strandat 190.334 kb on - strand, within Atu6175at 190.386 kb on - strand, within Atu6175at 190.422 kb on - strand, within Atu6175at 190.448 kb on + strand, within Atu6175at 190.493 kb on - strand, within Atu6175at 190.595 kb on - strand, within Atu6175at 190.628 kb on + strand, within Atu6175at 190.638 kb on - strand, within Atu6175at 190.656 kb on - strand, within Atu6175at 190.711 kb on + strand, within Atu6175at 190.711 kb on + strand, within Atu6175at 190.711 kb on + strand, within Atu6175at 190.711 kb on - strand, within Atu6175at 190.751 kb on - strand, within Atu6175at 190.751 kb on - strand, within Atu6175at 190.752 kb on + strand, within Atu6175at 190.801 kb on + strand, within Atu6175at 190.814 kb on - strand, within Atu6175at 190.816 kb on + strand, within Atu6175at 190.844 kb on + strand, within Atu6175at 190.852 kb on - strand, within Atu6175at 190.865 kb on - strand, within Atu6175at 190.876 kb on - strand, within Atu6175at 190.876 kb on - strand, within Atu6175at 190.892 kb on + strand, within Atu6175at 190.898 kb on + strand, within Atu6175at 190.906 kb on - strand, within Atu6175at 190.906 kb on - strand, within Atu6175at 190.926 kb on + strand, within Atu6175at 190.937 kb on + strand, within Atu6175at 191.000 kb on - strand, within Atu6175at 191.018 kb on + strand, within Atu6175at 191.018 kb on + strand, within Atu6175at 191.037 kb on + strandat 191.061 kb on + strandat 191.069 kb on - strandat 191.069 kb on - strandat 191.069 kb on - strandat 191.100 kb on + strandat 191.108 kb on - strandat 191.118 kb on - strandat 191.158 kb on - strandat 191.204 kb on - strandat 191.254 kb on - strand, within Atu6176at 191.299 kb on + strand, within Atu6176at 191.362 kb on - strand, within Atu6176at 191.363 kb on - strand, within Atu6176at 191.389 kb on + strand, within Atu6176at 191.413 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.472 kb on + strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.480 kb on - strand, within Atu6176at 191.482 kb on + strand, within Atu6176at 191.490 kb on - strand, within Atu6176at 191.514 kb on - strand, within Atu6176at 191.550 kb on - strand, within Atu6176at 191.578 kb on + strand, within Atu6176at 191.611 kb on + strand, within Atu6176at 191.617 kb on - strand, within Atu6176at 191.625 kb on + strand, within Atu6176at 191.630 kb on + strand, within Atu6176at 191.638 kb on - strand, within Atu6176at 191.638 kb on - strand, within Atu6176at 191.643 kb on + strand, within Atu6176at 191.645 kb on - strand, within Atu6176at 191.714 kb on + strand, within Atu6176at 191.742 kb on + strand, within Atu6176at 191.742 kb on + strand, within Atu6176at 191.771 kb on + strand, within Atu6176at 191.779 kb on - strand, within Atu6176at 191.822 kb on + strand, within Atu6176at 191.917 kb on - strand, within Atu6176at 191.986 kb on - strand, within Atu6176at 191.993 kb on - strand, within Atu6176at 192.001 kb on - strand, within Atu6176at 192.055 kb on + strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.063 kb on - strand, within Atu6176at 192.072 kb on + strand, within Atu6176at 192.100 kb on + strand, within Atu6176at 192.100 kb on + strand, within Atu6176at 192.108 kb on - strand, within Atu6176at 192.197 kb on + strandat 192.202 kb on - strandat 192.269 kb on - strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.342 kb on + strandat 192.360 kb on + strandat 192.396 kb on + strandat 192.435 kb on - strand, within Atu6177at 192.495 kb on + strand, within Atu6177at 192.495 kb on + strand, within Atu6177at 192.505 kb on + strand, within Atu6177at 192.578 kb on - strand, within Atu6177at 192.593 kb on - strand, within Atu6177at 192.638 kb on + strand, within Atu6177at 192.664 kb on - strand, within Atu6177at 192.751 kb on - strand, within Atu6177at 192.762 kb on + strand, within Atu6177at 192.785 kb on + strand, within Atu6177at 192.800 kb on + strand, within Atu6177at 192.833 kb on + strand, within Atu6177at 192.834 kb on - strand, within Atu6177at 192.838 kb on + strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.841 kb on - strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.915 kb on + strand, within Atu6177at 192.923 kb on - strand, within Atu6177at 192.925 kb on + strand, within Atu6177at 192.945 kb on - strand, within Atu6177at 192.947 kb on + strand, within Atu6177at 192.981 kb on + strand, within Atu6177at 192.982 kb on + strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.989 kb on - strand, within Atu6177at 192.994 kb on + strand, within Atu6177at 193.003 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.005 kb on + strand, within Atu6177at 193.013 kb on - strand, within Atu6177at 193.015 kb on + strand, within Atu6177at 193.056 kb on + strand, within Atu6177at 193.105 kb on - strand, within Atu6177at 193.175 kb on - strand, within Atu6177at 193.216 kb on + strand, within Atu6177at 193.216 kb on - strand, within Atu6177at 193.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.5
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190,119 - Atu6174 0.82 +0.1
190,153 + Atu6174 0.87 -0.4
190,161 - Atu6174 0.88 +0.8
190,171 - Atu6174 0.90 -1.3
190,189 + +0.2
190,201 + +0.2
190,222 + -0.2
190,279 - +0.2
190,307 - -0.0
190,321 + +0.4
190,326 + -0.8
190,326 + -0.0
190,329 - -0.5
190,334 - Atu6175 0.11 +1.0
190,386 - Atu6175 0.16 -0.0
190,422 - Atu6175 0.21 +1.0
190,448 + Atu6175 0.23 +0.1
190,493 - Atu6175 0.29 +0.5
190,595 - Atu6175 0.40 +0.3
190,628 + Atu6175 0.44 -0.2
190,638 - Atu6175 0.45 +1.0
190,656 - Atu6175 0.47 +0.6
190,711 + Atu6175 0.53 +0.2
190,711 + Atu6175 0.53 +0.3
190,711 + Atu6175 0.53 +0.1
190,711 - Atu6175 0.53 -0.3
190,751 - Atu6175 0.58 +0.9
190,751 - Atu6175 0.58 +0.1
190,752 + Atu6175 0.58 +0.4
190,801 + Atu6175 0.63 -0.4
190,814 - Atu6175 0.65 +1.1
190,816 + Atu6175 0.65 +0.1
190,844 + Atu6175 0.68 +0.3
190,852 - Atu6175 0.69 +1.2
190,865 - Atu6175 0.71 +0.2
190,876 - Atu6175 0.72 -0.5
190,876 - Atu6175 0.72 -0.4
190,892 + Atu6175 0.74 -0.1
190,898 + Atu6175 0.74 +0.5
190,906 - Atu6175 0.75 +0.4
190,906 - Atu6175 0.75 +0.9
190,926 + Atu6175 0.78 +0.2
190,937 + Atu6175 0.79 -1.2
191,000 - Atu6175 0.86 -0.4
191,018 + Atu6175 0.88 +0.5
191,018 + Atu6175 0.88 +0.0
191,037 + +0.3
191,061 + +0.3
191,069 - +0.5
191,069 - -0.6
191,069 - +0.4
191,100 + -0.2
191,108 - +0.2
191,118 - -0.2
191,158 - -0.5
191,204 - +0.2
191,254 - Atu6176 0.12 +0.6
191,299 + Atu6176 0.16 -1.1
191,362 - Atu6176 0.21 +0.4
191,363 - Atu6176 0.22 -0.5
191,389 + Atu6176 0.24 +1.7
191,413 + Atu6176 0.26 -0.6
191,472 + Atu6176 0.31 +0.3
191,472 + Atu6176 0.31 -0.0
191,472 + Atu6176 0.31 +0.1
191,480 - Atu6176 0.32 -0.3
191,480 - Atu6176 0.32 +0.8
191,480 - Atu6176 0.32 +2.0
191,482 + Atu6176 0.32 +0.7
191,490 - Atu6176 0.33 +0.7
191,514 - Atu6176 0.35 -0.3
191,550 - Atu6176 0.38 +1.1
191,578 + Atu6176 0.40 +0.6
191,611 + Atu6176 0.43 +1.6
191,617 - Atu6176 0.44 -0.1
191,625 + Atu6176 0.45 +0.2
191,630 + Atu6176 0.45 +0.5
191,638 - Atu6176 0.46 +1.1
191,638 - Atu6176 0.46 +0.6
191,643 + Atu6176 0.46 +0.4
191,645 - Atu6176 0.46 -0.1
191,714 + Atu6176 0.52 +0.4
191,742 + Atu6176 0.55 +0.6
191,742 + Atu6176 0.55 -0.5
191,771 + Atu6176 0.57 +1.1
191,779 - Atu6176 0.58 -0.4
191,822 + Atu6176 0.62 +0.1
191,917 - Atu6176 0.70 +0.6
191,986 - Atu6176 0.76 +0.6
191,993 - Atu6176 0.77 -1.1
192,001 - Atu6176 0.78 -0.1
192,055 + Atu6176 0.83 +0.3
192,063 - Atu6176 0.83 -0.2
192,063 - Atu6176 0.83 +0.4
192,063 - Atu6176 0.83 -0.2
192,072 + Atu6176 0.84 -0.9
192,100 + Atu6176 0.87 +0.6
192,100 + Atu6176 0.87 +0.2
192,108 - Atu6176 0.87 +1.2
192,197 + +0.3
192,202 - +0.0
192,269 - -0.6
192,312 + +0.6
192,312 + +0.7
192,342 + +1.2
192,360 + +0.3
192,396 + +0.6
192,435 - Atu6177 0.14 -0.4
192,495 + Atu6177 0.20 -0.1
192,495 + Atu6177 0.20 +1.9
192,505 + Atu6177 0.20 +0.3
192,578 - Atu6177 0.28 +1.1
192,593 - Atu6177 0.29 +0.1
192,638 + Atu6177 0.33 +1.2
192,664 - Atu6177 0.36 +0.4
192,751 - Atu6177 0.44 +0.7
192,762 + Atu6177 0.45 +0.3
192,785 + Atu6177 0.48 +0.0
192,800 + Atu6177 0.49 +0.3
192,833 + Atu6177 0.52 +0.2
192,834 - Atu6177 0.52 +0.1
192,838 + Atu6177 0.53 +1.2
192,841 - Atu6177 0.53 +0.5
192,841 - Atu6177 0.53 -1.3
192,841 - Atu6177 0.53 +0.4
192,915 + Atu6177 0.60 -2.5
192,915 + Atu6177 0.60 -0.2
192,923 - Atu6177 0.61 -1.4
192,925 + Atu6177 0.61 +0.8
192,945 - Atu6177 0.63 +0.1
192,947 + Atu6177 0.63 -0.3
192,981 + Atu6177 0.66 -0.1
192,982 + Atu6177 0.67 +0.4
192,989 - Atu6177 0.67 +0.9
192,989 - Atu6177 0.67 -0.1
192,989 - Atu6177 0.67 +0.1
192,989 - Atu6177 0.67 +0.2
192,994 + Atu6177 0.68 -0.4
193,003 + Atu6177 0.69 -0.4
193,005 + Atu6177 0.69 +2.0
193,005 + Atu6177 0.69 -0.1
193,013 - Atu6177 0.70 +0.5
193,015 + Atu6177 0.70 +1.2
193,056 + Atu6177 0.74 -0.5
193,105 - Atu6177 0.78 +0.0
193,175 - Atu6177 0.85 -0.2
193,216 + Atu6177 0.89 +0.2
193,216 - Atu6177 0.89 +0.5
193,245 + -0.8

Or see this region's nucleotide sequence