Experiment: Bethi_Library_OD0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6172 and Atu6173 are separated by 35 nucleotides Atu6173 and Atu6174 overlap by 14 nucleotides Atu6174 and Atu6175 overlap by 4 nucleotides Atu6175 and Atu6176 overlap by 4 nucleotides
Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341
Atu6172
Atu6173: Atu6173 - component of type IV secretion system, at 189,377 to 189,544
Atu6173
Atu6174: Atu6174 - component of type IV secretion system, at 189,531 to 190,244
Atu6174
Atu6175: Atu6175 - component of type IV secretion system, at 190,241 to 191,122
Atu6175
Atu6176: Atu6176 - component of type IV secretion system, at 191,119 to 192,252
Atu6176
Position (kb) 190
191
192 Strain fitness (log2 ratio) -1
0
1
2 at 189.311 kb on - strand at 189.311 kb on - strand at 189.343 kb on - strand at 189.375 kb on + strand at 189.375 kb on + strand at 189.394 kb on + strand, within Atu6173 at 189.486 kb on + strand, within Atu6173 at 189.503 kb on + strand, within Atu6173 at 189.511 kb on - strand, within Atu6173 at 189.519 kb on - strand, within Atu6173 at 189.521 kb on - strand, within Atu6173 at 189.537 kb on - strand at 189.538 kb on + strand at 189.546 kb on - strand at 189.548 kb on + strand at 189.551 kb on - strand at 189.576 kb on + strand at 189.579 kb on - strand at 189.584 kb on + strand at 189.584 kb on + strand at 189.592 kb on - strand at 189.593 kb on + strand at 189.602 kb on + strand at 189.638 kb on + strand, within Atu6174 at 189.645 kb on - strand, within Atu6174 at 189.646 kb on - strand, within Atu6174 at 189.652 kb on - strand, within Atu6174 at 189.655 kb on - strand, within Atu6174 at 189.665 kb on - strand, within Atu6174 at 189.687 kb on + strand, within Atu6174 at 189.710 kb on - strand, within Atu6174 at 189.722 kb on + strand, within Atu6174 at 189.722 kb on + strand, within Atu6174 at 189.725 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.730 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.735 kb on - strand, within Atu6174 at 189.805 kb on - strand, within Atu6174 at 189.810 kb on - strand, within Atu6174 at 189.813 kb on - strand, within Atu6174 at 189.846 kb on + strand, within Atu6174 at 189.852 kb on - strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.889 kb on + strand, within Atu6174 at 189.890 kb on - strand, within Atu6174 at 189.892 kb on - strand, within Atu6174 at 189.897 kb on - strand, within Atu6174 at 189.897 kb on - strand, within Atu6174 at 189.916 kb on + strand, within Atu6174 at 189.924 kb on - strand, within Atu6174 at 189.924 kb on - strand, within Atu6174 at 190.000 kb on + strand, within Atu6174 at 190.003 kb on - strand, within Atu6174 at 190.030 kb on + strand, within Atu6174 at 190.038 kb on - strand, within Atu6174 at 190.111 kb on - strand, within Atu6174 at 190.119 kb on - strand, within Atu6174 at 190.153 kb on + strand, within Atu6174 at 190.161 kb on - strand, within Atu6174 at 190.171 kb on - strand, within Atu6174 at 190.189 kb on + strand at 190.201 kb on + strand at 190.222 kb on + strand at 190.279 kb on - strand at 190.307 kb on - strand at 190.321 kb on + strand at 190.326 kb on + strand at 190.326 kb on + strand at 190.329 kb on - strand at 190.334 kb on - strand, within Atu6175 at 190.386 kb on - strand, within Atu6175 at 190.422 kb on - strand, within Atu6175 at 190.448 kb on + strand, within Atu6175 at 190.493 kb on - strand, within Atu6175 at 190.595 kb on - strand, within Atu6175 at 190.628 kb on + strand, within Atu6175 at 190.638 kb on - strand, within Atu6175 at 190.656 kb on - strand, within Atu6175 at 190.711 kb on + strand, within Atu6175 at 190.711 kb on + strand, within Atu6175 at 190.711 kb on + strand, within Atu6175 at 190.711 kb on - strand, within Atu6175 at 190.751 kb on - strand, within Atu6175 at 190.751 kb on - strand, within Atu6175 at 190.752 kb on + strand, within Atu6175 at 190.801 kb on + strand, within Atu6175 at 190.814 kb on - strand, within Atu6175 at 190.816 kb on + strand, within Atu6175 at 190.844 kb on + strand, within Atu6175 at 190.852 kb on - strand, within Atu6175 at 190.865 kb on - strand, within Atu6175 at 190.876 kb on - strand, within Atu6175 at 190.876 kb on - strand, within Atu6175 at 190.892 kb on + strand, within Atu6175 at 190.898 kb on + strand, within Atu6175 at 190.906 kb on - strand, within Atu6175 at 190.906 kb on - strand, within Atu6175 at 190.926 kb on + strand, within Atu6175 at 190.937 kb on + strand, within Atu6175 at 191.000 kb on - strand, within Atu6175 at 191.018 kb on + strand, within Atu6175 at 191.018 kb on + strand, within Atu6175 at 191.037 kb on + strand at 191.061 kb on + strand at 191.069 kb on - strand at 191.069 kb on - strand at 191.069 kb on - strand at 191.100 kb on + strand at 191.108 kb on - strand at 191.118 kb on - strand at 191.158 kb on - strand at 191.204 kb on - strand at 191.254 kb on - strand, within Atu6176 at 191.299 kb on + strand, within Atu6176 at 191.362 kb on - strand, within Atu6176 at 191.363 kb on - strand, within Atu6176 at 191.389 kb on + strand, within Atu6176 at 191.413 kb on + strand, within Atu6176 at 191.472 kb on + strand, within Atu6176 at 191.472 kb on + strand, within Atu6176 at 191.472 kb on + strand, within Atu6176 at 191.480 kb on - strand, within Atu6176 at 191.480 kb on - strand, within Atu6176 at 191.480 kb on - strand, within Atu6176 at 191.482 kb on + strand, within Atu6176 at 191.490 kb on - strand, within Atu6176 at 191.514 kb on - strand, within Atu6176 at 191.550 kb on - strand, within Atu6176 at 191.578 kb on + strand, within Atu6176 at 191.611 kb on + strand, within Atu6176 at 191.617 kb on - strand, within Atu6176 at 191.625 kb on + strand, within Atu6176 at 191.630 kb on + strand, within Atu6176 at 191.638 kb on - strand, within Atu6176 at 191.638 kb on - strand, within Atu6176 at 191.643 kb on + strand, within Atu6176 at 191.645 kb on - strand, within Atu6176 at 191.714 kb on + strand, within Atu6176 at 191.742 kb on + strand, within Atu6176 at 191.742 kb on + strand, within Atu6176 at 191.771 kb on + strand, within Atu6176 at 191.779 kb on - strand, within Atu6176 at 191.822 kb on + strand, within Atu6176 at 191.917 kb on - strand, within Atu6176 at 191.986 kb on - strand, within Atu6176 at 191.993 kb on - strand, within Atu6176 at 192.001 kb on - strand, within Atu6176 at 192.055 kb on + strand, within Atu6176 at 192.063 kb on - strand, within Atu6176 at 192.063 kb on - strand, within Atu6176 at 192.063 kb on - strand, within Atu6176 at 192.072 kb on + strand, within Atu6176 at 192.100 kb on + strand, within Atu6176 at 192.100 kb on + strand, within Atu6176 at 192.108 kb on - strand, within Atu6176
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.5 remove 189,311 - -0.0 189,311 - -0.2 189,343 - +0.0 189,375 + -1.4 189,375 + -0.1 189,394 + Atu6173 0.10 +0.3 189,486 + Atu6173 0.65 +0.0 189,503 + Atu6173 0.75 +0.2 189,511 - Atu6173 0.80 +0.8 189,519 - Atu6173 0.85 +0.6 189,521 - Atu6173 0.86 -0.9 189,537 - +1.0 189,538 + +0.6 189,546 - +0.9 189,548 + -0.1 189,551 - +0.1 189,576 + +1.6 189,579 - +0.7 189,584 + +0.3 189,584 + -0.0 189,592 - +1.0 189,593 + +1.2 189,602 + +0.5 189,638 + Atu6174 0.15 +0.1 189,645 - Atu6174 0.16 +0.4 189,646 - Atu6174 0.16 +0.7 189,652 - Atu6174 0.17 +0.5 189,655 - Atu6174 0.17 +0.0 189,665 - Atu6174 0.19 +0.1 189,687 + Atu6174 0.22 -0.3 189,710 - Atu6174 0.25 +1.2 189,722 + Atu6174 0.27 +0.7 189,722 + Atu6174 0.27 +0.4 189,725 - Atu6174 0.27 +0.4 189,730 - Atu6174 0.28 +0.1 189,730 - Atu6174 0.28 +0.4 189,730 - Atu6174 0.28 +0.3 189,730 - Atu6174 0.28 -0.0 189,735 - Atu6174 0.29 +0.1 189,735 - Atu6174 0.29 -0.1 189,735 - Atu6174 0.29 -1.4 189,805 - Atu6174 0.38 +0.6 189,810 - Atu6174 0.39 -0.4 189,813 - Atu6174 0.39 +0.0 189,846 + Atu6174 0.44 +0.1 189,852 - Atu6174 0.45 +0.0 189,889 + Atu6174 0.50 -0.1 189,889 + Atu6174 0.50 -0.2 189,889 + Atu6174 0.50 -0.1 189,890 - Atu6174 0.50 +1.1 189,892 - Atu6174 0.51 +1.2 189,897 - Atu6174 0.51 -0.6 189,897 - Atu6174 0.51 -0.0 189,916 + Atu6174 0.54 +1.2 189,924 - Atu6174 0.55 +0.2 189,924 - Atu6174 0.55 -0.2 190,000 + Atu6174 0.66 +0.8 190,003 - Atu6174 0.66 -0.6 190,030 + Atu6174 0.70 +0.1 190,038 - Atu6174 0.71 +1.6 190,111 - Atu6174 0.81 -0.1 190,119 - Atu6174 0.82 +0.1 190,153 + Atu6174 0.87 -0.4 190,161 - Atu6174 0.88 +0.8 190,171 - Atu6174 0.90 -1.3 190,189 + +0.2 190,201 + +0.2 190,222 + -0.2 190,279 - +0.2 190,307 - -0.0 190,321 + +0.4 190,326 + -0.8 190,326 + -0.0 190,329 - -0.5 190,334 - Atu6175 0.11 +1.0 190,386 - Atu6175 0.16 -0.0 190,422 - Atu6175 0.21 +1.0 190,448 + Atu6175 0.23 +0.1 190,493 - Atu6175 0.29 +0.5 190,595 - Atu6175 0.40 +0.3 190,628 + Atu6175 0.44 -0.2 190,638 - Atu6175 0.45 +1.0 190,656 - Atu6175 0.47 +0.6 190,711 + Atu6175 0.53 +0.2 190,711 + Atu6175 0.53 +0.3 190,711 + Atu6175 0.53 +0.1 190,711 - Atu6175 0.53 -0.3 190,751 - Atu6175 0.58 +0.9 190,751 - Atu6175 0.58 +0.1 190,752 + Atu6175 0.58 +0.4 190,801 + Atu6175 0.63 -0.4 190,814 - Atu6175 0.65 +1.1 190,816 + Atu6175 0.65 +0.1 190,844 + Atu6175 0.68 +0.3 190,852 - Atu6175 0.69 +1.2 190,865 - Atu6175 0.71 +0.2 190,876 - Atu6175 0.72 -0.5 190,876 - Atu6175 0.72 -0.4 190,892 + Atu6175 0.74 -0.1 190,898 + Atu6175 0.74 +0.5 190,906 - Atu6175 0.75 +0.4 190,906 - Atu6175 0.75 +0.9 190,926 + Atu6175 0.78 +0.2 190,937 + Atu6175 0.79 -1.2 191,000 - Atu6175 0.86 -0.4 191,018 + Atu6175 0.88 +0.5 191,018 + Atu6175 0.88 +0.0 191,037 + +0.3 191,061 + +0.3 191,069 - +0.5 191,069 - -0.6 191,069 - +0.4 191,100 + -0.2 191,108 - +0.2 191,118 - -0.2 191,158 - -0.5 191,204 - +0.2 191,254 - Atu6176 0.12 +0.6 191,299 + Atu6176 0.16 -1.1 191,362 - Atu6176 0.21 +0.4 191,363 - Atu6176 0.22 -0.5 191,389 + Atu6176 0.24 +1.7 191,413 + Atu6176 0.26 -0.6 191,472 + Atu6176 0.31 +0.3 191,472 + Atu6176 0.31 -0.0 191,472 + Atu6176 0.31 +0.1 191,480 - Atu6176 0.32 -0.3 191,480 - Atu6176 0.32 +0.8 191,480 - Atu6176 0.32 +2.0 191,482 + Atu6176 0.32 +0.7 191,490 - Atu6176 0.33 +0.7 191,514 - Atu6176 0.35 -0.3 191,550 - Atu6176 0.38 +1.1 191,578 + Atu6176 0.40 +0.6 191,611 + Atu6176 0.43 +1.6 191,617 - Atu6176 0.44 -0.1 191,625 + Atu6176 0.45 +0.2 191,630 + Atu6176 0.45 +0.5 191,638 - Atu6176 0.46 +1.1 191,638 - Atu6176 0.46 +0.6 191,643 + Atu6176 0.46 +0.4 191,645 - Atu6176 0.46 -0.1 191,714 + Atu6176 0.52 +0.4 191,742 + Atu6176 0.55 +0.6 191,742 + Atu6176 0.55 -0.5 191,771 + Atu6176 0.57 +1.1 191,779 - Atu6176 0.58 -0.4 191,822 + Atu6176 0.62 +0.1 191,917 - Atu6176 0.70 +0.6 191,986 - Atu6176 0.76 +0.6 191,993 - Atu6176 0.77 -1.1 192,001 - Atu6176 0.78 -0.1 192,055 + Atu6176 0.83 +0.3 192,063 - Atu6176 0.83 -0.2 192,063 - Atu6176 0.83 +0.4 192,063 - Atu6176 0.83 -0.2 192,072 + Atu6176 0.84 -0.9 192,100 + Atu6176 0.87 +0.6 192,100 + Atu6176 0.87 +0.2 192,108 - Atu6176 0.87 +1.2
Or see this region's nucleotide sequence