Experiment: Bethi_Library_OD0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5407 and Atu5408 are separated by 103 nucleotides Atu5408 and Atu5409 are separated by 3 nucleotides Atu5409 and Atu5410 are separated by 627 nucleotides
Atu5407: Atu5407 - hypothetical protein, at 401,642 to 402,772
Atu5407
Atu5408: Atu5408 - ABC transporter membrane spanning protein (amino acid), at 402,876 to 403,730
Atu5408
Atu5409: Atu5409 - ABC transporter substrate binding protein (amino acid), at 403,734 to 404,669
Atu5409
Atu5410: Atu5410 - ABC transporter nucleotide binding/ATPase, at 405,297 to 406,412
Atu5410
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.803 kb on - strand at 402.856 kb on + strand at 402.864 kb on - strand at 402.925 kb on + strand at 402.930 kb on + strand at 402.990 kb on - strand, within Atu5408 at 402.990 kb on - strand, within Atu5408 at 403.026 kb on - strand, within Atu5408 at 403.132 kb on + strand, within Atu5408 at 403.159 kb on + strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.167 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.176 kb on - strand, within Atu5408 at 403.177 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.200 kb on - strand, within Atu5408 at 403.202 kb on + strand, within Atu5408 at 403.260 kb on + strand, within Atu5408 at 403.413 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.446 kb on + strand, within Atu5408 at 403.454 kb on - strand, within Atu5408 at 403.558 kb on + strand, within Atu5408 at 403.622 kb on - strand, within Atu5408 at 403.668 kb on + strand at 403.668 kb on + strand at 403.675 kb on + strand at 403.675 kb on - strand at 403.676 kb on - strand at 403.731 kb on + strand at 403.740 kb on - strand at 403.784 kb on + strand at 403.798 kb on - strand at 403.838 kb on - strand, within Atu5409 at 403.842 kb on + strand, within Atu5409 at 403.850 kb on - strand, within Atu5409 at 403.882 kb on - strand, within Atu5409 at 403.932 kb on + strand, within Atu5409 at 404.006 kb on - strand, within Atu5409 at 404.086 kb on + strand, within Atu5409 at 404.094 kb on - strand, within Atu5409 at 404.129 kb on - strand, within Atu5409 at 404.173 kb on - strand, within Atu5409 at 404.250 kb on - strand, within Atu5409 at 404.302 kb on + strand, within Atu5409 at 404.315 kb on - strand, within Atu5409 at 404.317 kb on + strand, within Atu5409 at 404.323 kb on - strand, within Atu5409 at 404.347 kb on - strand, within Atu5409 at 404.372 kb on + strand, within Atu5409 at 404.373 kb on + strand, within Atu5409 at 404.380 kb on - strand, within Atu5409 at 404.382 kb on + strand, within Atu5409 at 404.426 kb on - strand, within Atu5409 at 404.536 kb on + strand, within Atu5409 at 404.583 kb on + strand at 404.601 kb on - strand at 404.769 kb on - strand at 404.769 kb on - strand at 404.890 kb on - strand at 405.179 kb on + strand at 405.181 kb on + strand at 405.189 kb on + strand at 405.256 kb on - strand at 405.264 kb on - strand at 405.268 kb on - strand at 405.270 kb on + strand at 405.425 kb on + strand, within Atu5410 at 405.433 kb on - strand, within Atu5410 at 405.474 kb on + strand, within Atu5410 at 405.496 kb on + strand, within Atu5410 at 405.506 kb on + strand, within Atu5410 at 405.521 kb on - strand, within Atu5410 at 405.539 kb on - strand, within Atu5410 at 405.590 kb on - strand, within Atu5410
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.5 remove 402,803 - -1.2 402,856 + -0.1 402,864 - -1.0 402,925 + -1.7 402,930 + -0.5 402,990 - Atu5408 0.13 +1.7 402,990 - Atu5408 0.13 -1.2 403,026 - Atu5408 0.18 +0.3 403,132 + Atu5408 0.30 -0.2 403,159 + Atu5408 0.33 -0.0 403,167 - Atu5408 0.34 -0.2 403,167 - Atu5408 0.34 -0.0 403,167 - Atu5408 0.34 +0.3 403,176 - Atu5408 0.35 +0.2 403,176 - Atu5408 0.35 -1.0 403,177 - Atu5408 0.35 -0.7 403,200 - Atu5408 0.38 -0.9 403,200 - Atu5408 0.38 +0.4 403,202 + Atu5408 0.38 +0.3 403,260 + Atu5408 0.45 +1.5 403,413 + Atu5408 0.63 +0.6 403,446 + Atu5408 0.67 +0.9 403,446 + Atu5408 0.67 -1.3 403,454 - Atu5408 0.68 +0.3 403,558 + Atu5408 0.80 -0.4 403,622 - Atu5408 0.87 +0.2 403,668 + -0.6 403,668 + +0.0 403,675 + -0.8 403,675 - +1.3 403,676 - -0.1 403,731 + -0.7 403,740 - -0.5 403,784 + +0.1 403,798 - -1.1 403,838 - Atu5409 0.11 -1.0 403,842 + Atu5409 0.12 -0.1 403,850 - Atu5409 0.12 -0.5 403,882 - Atu5409 0.16 -0.8 403,932 + Atu5409 0.21 +0.3 404,006 - Atu5409 0.29 -1.0 404,086 + Atu5409 0.38 -0.4 404,094 - Atu5409 0.38 -0.8 404,129 - Atu5409 0.42 -1.3 404,173 - Atu5409 0.47 -0.0 404,250 - Atu5409 0.55 -1.4 404,302 + Atu5409 0.61 -0.9 404,315 - Atu5409 0.62 -1.0 404,317 + Atu5409 0.62 -0.8 404,323 - Atu5409 0.63 +0.1 404,347 - Atu5409 0.65 +0.1 404,372 + Atu5409 0.68 -0.4 404,373 + Atu5409 0.68 -0.9 404,380 - Atu5409 0.69 +0.4 404,382 + Atu5409 0.69 +0.8 404,426 - Atu5409 0.74 -0.5 404,536 + Atu5409 0.86 -0.7 404,583 + +1.3 404,601 - -0.7 404,769 - -0.5 404,769 - -0.7 404,890 - -0.0 405,179 + +0.4 405,181 + -1.6 405,189 + +0.2 405,256 - -0.5 405,264 - +1.3 405,268 - -1.0 405,270 + -0.9 405,425 + Atu5410 0.11 -0.2 405,433 - Atu5410 0.12 -0.7 405,474 + Atu5410 0.16 +0.5 405,496 + Atu5410 0.18 -0.1 405,506 + Atu5410 0.19 -0.0 405,521 - Atu5410 0.20 +2.3 405,539 - Atu5410 0.22 -0.5 405,590 - Atu5410 0.26 -2.4
Or see this region's nucleotide sequence