Strain Fitness in Agrobacterium fabrum C58 around Atu4713

Experiment: Bethi_Library_OD0.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.5
1,875,905	+				-0.8
1,875,906	-				-0.2
1,875,915	-				+0.2
1,875,918	+				-2.0
1,875,926	-				-0.1
1,875,927	+				-0.4
1,875,946	-				+0.1
1,875,985	+		Atu4712	0.15	+0.2
1,875,993	-		Atu4712	0.16	-1.2
1,876,039	-		Atu4712	0.23	-0.9
1,876,039	-		Atu4712	0.23	-0.3
1,876,046	-		Atu4712	0.24	+0.2
1,876,057	-		Atu4712	0.25	+0.1
1,876,064	+		Atu4712	0.27	+0.2
1,876,064	+		Atu4712	0.27	-0.7
1,876,069	+		Atu4712	0.27	-0.1
1,876,072	-		Atu4712	0.28	-0.4
1,876,072	-		Atu4712	0.28	-0.9
1,876,085	-		Atu4712	0.30	-0.3
1,876,124	+		Atu4712	0.36	-0.2
1,876,132	+		Atu4712	0.37	-0.1
1,876,132	-		Atu4712	0.37	-0.2
1,876,140	-		Atu4712	0.38	+0.1
1,876,273	+		Atu4712	0.58	+1.1
1,876,463	-		Atu4712	0.87	+0.0
1,876,622	-				-0.6
1,876,646	+				+0.1
1,876,651	+				-0.2
1,876,659	-				-0.3
1,876,659	-				-0.0
1,876,659	-				-1.4
1,876,686	+				-0.3
1,876,789	+		Atu4713	0.18	+1.7
1,876,797	-		Atu4713	0.20	-0.1
1,876,838	+		Atu4713	0.27	+0.1
1,877,051	-		Atu4713	0.64	-1.2
1,877,068	-		Atu4713	0.67	-0.1
1,877,091	-		Atu4713	0.71	-0.8
1,877,115	+		Atu4713	0.76	-0.8
1,877,123	-		Atu4713	0.77	-0.7
1,877,139	-		Atu4713	0.80	-2.0
1,877,264	-				+0.2
1,877,264	-				-0.5
1,877,319	-				-0.0
1,877,319	-				-2.0
1,877,319	-				-1.9
1,877,319	-				+0.2
1,877,329	-				-0.5
1,877,373	+				-0.2
1,877,381	-				+0.2
1,877,403	-				+0.1
1,877,419	+		Atu4714	0.12	-1.1
1,877,447	+		Atu4714	0.18	-0.9
1,877,455	-		Atu4714	0.19	-0.2
1,877,593	-		Atu4714	0.47	+0.3
1,877,613	-		Atu4714	0.50	-0.5
1,877,681	+		Atu4714	0.64	+0.1
1,877,681	+		Atu4714	0.64	+0.1
1,877,689	-		Atu4714	0.65	+0.1
1,877,799	-		Atu4714	0.87	-0.6
1,877,815	+				-0.4
1,877,822	+				-1.7
1,877,830	-				-1.1
1,877,830	-				+0.2
1,877,873	+				-0.5
1,877,957	+		Atu8199	0.28	-0.1
1,877,978	-		Atu8199	0.34	+0.0
1,878,001	+		Atu8199	0.41	+0.6
1,878,026	+		Atu8199	0.48	-0.6
1,878,067	+		Atu8199	0.59	+0.1
1,878,082	-		Atu8199	0.64	+0.1
1,878,084	-		Atu8199	0.64	-0.2
1,878,090	+		Atu8199	0.66	-0.2
1,878,097	+		Atu8199	0.68	-0.1
1,878,097	+		Atu8199	0.68	+0.1
1,878,105	-		Atu8199	0.70	+0.2
1,878,119	+		Atu8199	0.74	+0.7
1,878,205	-				-0.2