Experiment: Bethi_Library_OD0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3591 and Atu8190 are separated by 17 nucleotides Atu8190 and Atu3593 are separated by 1 nucleotides Atu3593 and Atu3594 are separated by 32 nucleotides Atu3594 and Atu3595 are separated by 182 nucleotides Atu3595 and Atu3596 are separated by 25 nucleotides
Atu3591: Atu3591 - short chain dehydrogenase, at 647,058 to 647,891
Atu3591
Atu8190: Atu8190 - hypothetical protein, at 647,909 to 648,106
Atu8190
Atu3593: Atu3593 - hypothetical protein, at 648,108 to 648,686
Atu3593
Atu3594: Atu3594 - hypothetical protein, at 648,719 to 649,492
Atu3594
Atu3595: Atu3595 - electron transfer flavoprotein subunit beta, at 649,675 to 650,421
Atu3595
Atu3596: Atu3596 - electron transfer flavoprotein alpha subunit, at 650,447 to 651,376
Atu3596
Position (kb) 648
649
650 Strain fitness (log2 ratio) -1
0
1
2 at 647.748 kb on + strand, within Atu3591 at 647.767 kb on - strand, within Atu3591 at 647.769 kb on + strand, within Atu3591 at 647.772 kb on - strand, within Atu3591 at 647.795 kb on + strand, within Atu3591 at 647.803 kb on - strand, within Atu3591 at 647.831 kb on - strand at 647.869 kb on - strand at 647.869 kb on - strand at 647.902 kb on + strand at 647.904 kb on - strand at 647.927 kb on + strand at 647.930 kb on - strand, within Atu8190 at 647.935 kb on - strand, within Atu8190 at 647.935 kb on - strand, within Atu8190 at 647.943 kb on + strand, within Atu8190 at 647.978 kb on + strand, within Atu8190 at 647.988 kb on - strand, within Atu8190 at 648.105 kb on + strand at 648.214 kb on - strand, within Atu3593 at 648.254 kb on + strand, within Atu3593 at 648.262 kb on - strand, within Atu3593 at 648.335 kb on + strand, within Atu3593 at 648.384 kb on + strand, within Atu3593 at 648.451 kb on + strand, within Atu3593 at 648.489 kb on + strand, within Atu3593 at 648.537 kb on - strand, within Atu3593 at 648.543 kb on - strand, within Atu3593 at 648.687 kb on + strand at 648.690 kb on - strand at 648.704 kb on + strand at 648.712 kb on - strand at 648.728 kb on + strand at 648.800 kb on + strand, within Atu3594 at 648.808 kb on - strand, within Atu3594 at 648.813 kb on - strand, within Atu3594 at 648.839 kb on - strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.844 kb on + strand, within Atu3594 at 648.846 kb on - strand, within Atu3594 at 648.852 kb on - strand, within Atu3594 at 648.878 kb on - strand, within Atu3594 at 648.911 kb on - strand, within Atu3594 at 648.944 kb on + strand, within Atu3594 at 649.166 kb on - strand, within Atu3594 at 649.173 kb on + strand, within Atu3594 at 649.213 kb on - strand, within Atu3594 at 649.221 kb on + strand, within Atu3594 at 649.239 kb on - strand, within Atu3594 at 649.250 kb on - strand, within Atu3594 at 649.268 kb on + strand, within Atu3594 at 649.337 kb on + strand, within Atu3594 at 649.382 kb on - strand, within Atu3594 at 649.399 kb on + strand, within Atu3594 at 649.409 kb on - strand, within Atu3594 at 649.416 kb on + strand at 649.480 kb on - strand at 649.491 kb on - strand at 649.491 kb on - strand at 649.573 kb on + strand at 650.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.5 remove 647,748 + Atu3591 0.83 -0.1 647,767 - Atu3591 0.85 +0.4 647,769 + Atu3591 0.85 -0.4 647,772 - Atu3591 0.86 +0.6 647,795 + Atu3591 0.88 +0.1 647,803 - Atu3591 0.89 +0.5 647,831 - +1.7 647,869 - +0.3 647,869 - -0.5 647,902 + -0.6 647,904 - +0.3 647,927 + +1.7 647,930 - Atu8190 0.11 -0.4 647,935 - Atu8190 0.13 +0.0 647,935 - Atu8190 0.13 +1.1 647,943 + Atu8190 0.17 +1.1 647,978 + Atu8190 0.35 -0.7 647,988 - Atu8190 0.40 +0.5 648,105 + +0.0 648,214 - Atu3593 0.18 +0.3 648,254 + Atu3593 0.25 -0.3 648,262 - Atu3593 0.27 +0.8 648,335 + Atu3593 0.39 -0.1 648,384 + Atu3593 0.48 -0.8 648,451 + Atu3593 0.59 -1.2 648,489 + Atu3593 0.66 +0.3 648,537 - Atu3593 0.74 -1.5 648,543 - Atu3593 0.75 -0.3 648,687 + -1.0 648,690 - -0.1 648,704 + -0.6 648,712 - -0.6 648,728 + -0.5 648,800 + Atu3594 0.10 +0.5 648,808 - Atu3594 0.11 +1.1 648,813 - Atu3594 0.12 -0.1 648,839 - Atu3594 0.16 -1.5 648,844 + Atu3594 0.16 +1.7 648,844 + Atu3594 0.16 +0.1 648,846 - Atu3594 0.16 +2.0 648,852 - Atu3594 0.17 -0.9 648,878 - Atu3594 0.21 +0.6 648,911 - Atu3594 0.25 +0.7 648,944 + Atu3594 0.29 +0.1 649,166 - Atu3594 0.58 +0.5 649,173 + Atu3594 0.59 +0.0 649,213 - Atu3594 0.64 +0.2 649,221 + Atu3594 0.65 +1.0 649,239 - Atu3594 0.67 +0.0 649,250 - Atu3594 0.69 +0.1 649,268 + Atu3594 0.71 +0.4 649,337 + Atu3594 0.80 +1.9 649,382 - Atu3594 0.86 +0.4 649,399 + Atu3594 0.88 +2.5 649,409 - Atu3594 0.89 -0.3 649,416 + +0.1 649,480 - +0.2 649,491 - +0.6 649,491 - +0.2 649,573 + -0.0 650,415 + -0.9
Or see this region's nucleotide sequence