Experiment: Bethi_Library_OD0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0750 and Atu0751 overlap by 4 nucleotides Atu0751 and Atu0752 are separated by 112 nucleotides Atu0752 and Atu0753 are separated by 180 nucleotides
Atu0750: Atu0750 - ABC transporter, membrane spanning protein, at 747,717 to 748,349
Atu0750
Atu0751: Atu0751 - ABC transporter, nucleotide binding/ATPase protein (cobalt), at 748,346 to 749,026
Atu0751
Atu0752: Atu0752 - hypothetical protein, at 749,139 to 750,335
Atu0752
Atu0753: Atu0753 - 3,4-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II, at 750,516 to 751,616
Atu0753
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 748.142 kb on + strand, within Atu0750 at 748.142 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.199 kb on + strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.207 kb on - strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.209 kb on + strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.217 kb on - strand, within Atu0750 at 748.259 kb on + strand, within Atu0750 at 748.267 kb on - strand, within Atu0750 at 748.296 kb on - strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.360 kb on + strand at 748.368 kb on - strand at 748.374 kb on + strand at 748.436 kb on + strand, within Atu0751 at 748.505 kb on - strand, within Atu0751 at 748.627 kb on + strand, within Atu0751 at 748.835 kb on + strand, within Atu0751 at 748.864 kb on + strand, within Atu0751 at 748.913 kb on - strand, within Atu0751 at 748.935 kb on + strand, within Atu0751 at 748.954 kb on + strand, within Atu0751 at 749.035 kb on - strand at 749.052 kb on + strand at 749.060 kb on - strand at 749.230 kb on - strand at 749.246 kb on - strand at 749.284 kb on + strand, within Atu0752 at 749.284 kb on + strand, within Atu0752 at 749.475 kb on - strand, within Atu0752 at 749.580 kb on + strand, within Atu0752 at 749.616 kb on + strand, within Atu0752 at 749.618 kb on + strand, within Atu0752 at 749.626 kb on - strand, within Atu0752 at 749.699 kb on - strand, within Atu0752 at 749.719 kb on - strand, within Atu0752 at 749.773 kb on + strand, within Atu0752 at 749.853 kb on + strand, within Atu0752 at 749.942 kb on - strand, within Atu0752 at 749.963 kb on + strand, within Atu0752 at 750.000 kb on + strand, within Atu0752 at 750.018 kb on + strand, within Atu0752 at 750.018 kb on - strand, within Atu0752 at 750.132 kb on - strand, within Atu0752 at 750.179 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.214 kb on + strand, within Atu0752 at 750.266 kb on + strand at 750.281 kb on + strand at 750.281 kb on + strand at 750.286 kb on + strand at 750.289 kb on - strand at 750.336 kb on + strand at 750.367 kb on - strand at 750.449 kb on + strand at 750.497 kb on + strand at 750.508 kb on + strand at 750.562 kb on - strand at 750.591 kb on - strand at 750.617 kb on + strand at 750.901 kb on + strand, within Atu0753 at 750.929 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.931 kb on + strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.939 kb on - strand, within Atu0753 at 750.944 kb on - strand, within Atu0753 at 751.174 kb on + strand, within Atu0753 at 751.192 kb on - strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.289 kb on + strand, within Atu0753 at 751.297 kb on - strand, within Atu0753
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.5 remove 748,142 + Atu0750 0.67 +1.3 748,142 + Atu0750 0.67 -0.0 748,199 + Atu0750 0.76 -0.4 748,199 + Atu0750 0.76 -0.2 748,207 - Atu0750 0.77 +0.2 748,207 - Atu0750 0.77 +0.3 748,207 - Atu0750 0.77 -0.5 748,207 - Atu0750 0.77 +0.6 748,209 + Atu0750 0.78 -0.2 748,209 + Atu0750 0.78 +0.1 748,217 - Atu0750 0.79 +0.0 748,217 - Atu0750 0.79 -0.3 748,259 + Atu0750 0.86 +0.3 748,267 - Atu0750 0.87 -0.6 748,296 - +0.1 748,360 + +0.1 748,360 + -0.5 748,360 + -0.4 748,368 - +0.3 748,374 + +0.3 748,436 + Atu0751 0.13 -0.8 748,505 - Atu0751 0.23 +0.1 748,627 + Atu0751 0.41 +0.6 748,835 + Atu0751 0.72 +1.9 748,864 + Atu0751 0.76 -1.6 748,913 - Atu0751 0.83 -1.1 748,935 + Atu0751 0.86 +0.2 748,954 + Atu0751 0.89 +0.3 749,035 - -0.6 749,052 + -0.8 749,060 - -0.2 749,230 - +0.3 749,246 - +0.2 749,284 + Atu0752 0.12 +0.4 749,284 + Atu0752 0.12 -0.4 749,475 - Atu0752 0.28 +0.2 749,580 + Atu0752 0.37 +1.1 749,616 + Atu0752 0.40 +0.2 749,618 + Atu0752 0.40 -0.1 749,626 - Atu0752 0.41 +3.3 749,699 - Atu0752 0.47 -0.4 749,719 - Atu0752 0.48 +0.5 749,773 + Atu0752 0.53 -0.8 749,853 + Atu0752 0.60 +1.3 749,942 - Atu0752 0.67 +0.9 749,963 + Atu0752 0.69 +0.7 750,000 + Atu0752 0.72 +0.9 750,018 + Atu0752 0.73 +0.1 750,018 - Atu0752 0.73 +0.0 750,132 - Atu0752 0.83 -0.1 750,179 + Atu0752 0.87 +0.4 750,214 + Atu0752 0.90 +0.3 750,214 + Atu0752 0.90 -1.3 750,266 + +0.6 750,281 + -0.7 750,281 + +0.1 750,286 + +0.3 750,289 - +0.1 750,336 + +1.3 750,367 - -1.8 750,449 + +0.1 750,497 + -0.1 750,508 + +0.2 750,562 - -0.0 750,591 - -0.0 750,617 + -0.6 750,901 + Atu0753 0.35 +0.3 750,929 + Atu0753 0.38 +0.5 750,931 + Atu0753 0.38 +0.7 750,931 + Atu0753 0.38 +0.3 750,939 - Atu0753 0.38 -0.3 750,939 - Atu0753 0.38 -0.4 750,944 - Atu0753 0.39 +0.3 751,174 + Atu0753 0.60 +0.2 751,192 - Atu0753 0.61 +0.4 751,289 + Atu0753 0.70 +0.3 751,289 + Atu0753 0.70 +0.2 751,289 + Atu0753 0.70 -0.4 751,297 - Atu0753 0.71 +1.4
Or see this region's nucleotide sequence