Strain Fitness in Agrobacterium fabrum C58 around Atu4253

Experiment: Bethi_Library_OD0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.1
1,376,514	-		Atu4252	0.28	+0.0
1,376,584	+		Atu4252	0.34	+0.6
1,376,607	+		Atu4252	0.36	-0.5
1,376,617	+		Atu4252	0.36	-0.3
1,376,625	-		Atu4252	0.37	+0.0
1,376,731	-		Atu4252	0.45	+0.3
1,376,733	+		Atu4252	0.46	-0.4
1,376,737	-		Atu4252	0.46	-0.6
1,376,803	-		Atu4252	0.51	-0.2
1,376,846	+		Atu4252	0.55	-0.4
1,377,078	-		Atu4252	0.73	-0.3
1,377,160	+		Atu4252	0.80	-0.0
1,377,196	+		Atu4252	0.82	+0.1
1,377,196	+		Atu4252	0.82	+0.0
1,377,216	-		Atu4252	0.84	-0.1
1,377,319	+				+0.3
1,377,402	+				+0.1
1,377,466	+				-0.2
1,377,510	-				+0.6
1,377,510	-				+0.2
1,377,549	+				+2.3
1,377,550	+				+0.0
1,377,558	-				-1.1
1,377,735	-		Atu4253	0.18	-0.1
1,377,779	-		Atu4253	0.21	-0.1
1,377,819	-		Atu4253	0.23	-1.5
1,377,932	-		Atu4253	0.30	-1.3
1,377,972	+		Atu4253	0.33	-1.3
1,377,980	-		Atu4253	0.33	+0.3
1,377,980	-		Atu4253	0.33	+0.2
1,378,204	-		Atu4253	0.47	-0.1
1,378,204	-		Atu4253	0.47	-0.8
1,378,204	-		Atu4253	0.47	-1.6
1,378,223	-		Atu4253	0.48	+0.1
1,378,283	+		Atu4253	0.52	-0.4
1,378,306	-		Atu4253	0.53	+1.3
1,378,363	-		Atu4253	0.57	+0.1
1,378,422	+		Atu4253	0.61	-0.5
1,378,502	+		Atu4253	0.65	+0.2
1,378,552	-		Atu4253	0.69	-0.6
1,378,563	+		Atu4253	0.69	-0.6
1,378,610	+		Atu4253	0.72	-0.4
1,378,612	+		Atu4253	0.72	-0.4
1,378,663	+		Atu4253	0.75	-0.2
1,378,663	+		Atu4253	0.75	-0.7
1,378,672	-		Atu4253	0.76	-0.5
1,378,708	-		Atu4253	0.78	-0.8
1,378,883	+		Atu4253	0.89	+2.9
1,378,886	+		Atu4253	0.89	-0.7
1,378,899	-				+0.0
1,378,901	-				+0.0
1,378,961	+				-0.4
1,378,961	+				+0.7
1,378,961	+				-0.4
1,378,961	+				+0.1
1,378,964	-				+0.2
1,378,964	-				-0.3
1,378,964	-				-0.5
1,378,969	-				+0.5
1,378,988	-				+1.3
1,378,993	-				-1.3
1,379,150	-				+0.1
1,379,189	-		Atu4254	0.12	+0.5
1,379,194	-		Atu4254	0.13	-0.0
1,379,261	-		Atu4254	0.19	+0.2
1,379,261	-		Atu4254	0.19	-1.0
1,379,283	-		Atu4254	0.21	-0.1
1,379,283	-		Atu4254	0.21	-0.3
1,379,283	-		Atu4254	0.21	+0.1
1,379,283	-		Atu4254	0.21	-0.7
1,379,444	-		Atu4254	0.36	+0.8
1,379,444	-		Atu4254	0.36	+0.6
1,379,693	-		Atu4254	0.60	-0.3
1,379,712	+		Atu4254	0.62	+0.3