Strain Fitness in Agrobacterium fabrum C58 around Atu3284

Experiment: Bethi_Library_OD0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3283 and Atu3284 are separated by 4 nucleotidesAtu3284 and Atu3285 are separated by 11 nucleotides Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684 Atu3283 Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546 Atu3284 Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552 Atu3285 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.724 kb on + strandat 308.759 kb on - strandat 308.770 kb on + strandat 308.911 kb on + strand, within Atu3283at 308.918 kb on - strand, within Atu3283at 308.924 kb on + strand, within Atu3283at 308.940 kb on + strand, within Atu3283at 308.942 kb on + strand, within Atu3283at 308.942 kb on + strand, within Atu3283at 308.948 kb on - strand, within Atu3283at 308.948 kb on - strand, within Atu3283at 308.950 kb on - strand, within Atu3283at 308.950 kb on - strand, within Atu3283at 309.053 kb on - strand, within Atu3283at 309.066 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.080 kb on + strand, within Atu3283at 309.081 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.088 kb on - strand, within Atu3283at 309.102 kb on + strand, within Atu3283at 309.136 kb on + strand, within Atu3283at 309.164 kb on + strand, within Atu3283at 309.172 kb on + strand, within Atu3283at 309.213 kb on + strand, within Atu3283at 309.223 kb on + strand, within Atu3283at 309.223 kb on + strand, within Atu3283at 309.385 kb on + strand, within Atu3283at 309.446 kb on - strand, within Atu3283at 309.502 kb on - strand, within Atu3283at 309.550 kb on - strand, within Atu3283at 309.556 kb on + strand, within Atu3283at 309.567 kb on + strand, within Atu3283at 309.573 kb on - strand, within Atu3283at 309.575 kb on - strand, within Atu3283at 309.609 kb on - strandat 309.678 kb on + strandat 309.694 kb on - strandat 309.721 kb on - strandat 309.833 kb on - strand, within Atu3284at 309.845 kb on - strand, within Atu3284at 309.923 kb on + strand, within Atu3284at 309.923 kb on - strand, within Atu3284at 309.944 kb on + strand, within Atu3284at 309.957 kb on - strand, within Atu3284at 310.019 kb on - strand, within Atu3284at 310.123 kb on - strand, within Atu3284at 310.141 kb on - strand, within Atu3284at 310.144 kb on + strand, within Atu3284at 310.152 kb on - strand, within Atu3284at 310.152 kb on - strand, within Atu3284at 310.154 kb on + strand, within Atu3284at 310.163 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.272 kb on - strand, within Atu3284at 310.272 kb on - strand, within Atu3284at 310.332 kb on + strand, within Atu3284at 310.342 kb on + strand, within Atu3284at 310.359 kb on + strand, within Atu3284at 310.511 kb on + strandat 310.541 kb on + strandat 310.548 kb on + strandat 310.556 kb on - strandat 310.701 kb on + strandat 310.714 kb on - strandat 310.716 kb on - strandat 310.718 kb on + strandat 310.723 kb on + strandat 310.731 kb on - strandat 310.831 kb on + strand, within Atu3285at 310.981 kb on - strand, within Atu3285at 311.011 kb on - strand, within Atu3285at 311.066 kb on + strand, within Atu3285at 311.124 kb on - strand, within Atu3285at 311.154 kb on + strand, within Atu3285at 311.263 kb on + strand, within Atu3285at 311.320 kb on + strand, within Atu3285at 311.372 kb on + strand, within Atu3285at 311.373 kb on + strand, within Atu3285at 311.380 kb on - strand, within Atu3285at 311.391 kb on - strand, within Atu3285at 311.441 kb on + strand, within Atu3285at 311.441 kb on + strand, within Atu3285at 311.449 kb on - strand, within Atu3285at 311.449 kb on - strand, within Atu3285

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.1
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308,724 + +0.2
308,759 - -2.1
308,770 + -0.2
308,911 + Atu3283 0.17 -0.1
308,918 - Atu3283 0.17 +0.8
308,924 + Atu3283 0.18 -0.6
308,940 + Atu3283 0.20 +0.2
308,942 + Atu3283 0.20 +0.2
308,942 + Atu3283 0.20 +1.6
308,948 - Atu3283 0.20 +0.1
308,948 - Atu3283 0.20 +0.3
308,950 - Atu3283 0.21 -0.9
308,950 - Atu3283 0.21 -0.2
309,053 - Atu3283 0.32 +0.4
309,066 + Atu3283 0.33 -0.3
309,080 + Atu3283 0.35 +0.2
309,080 + Atu3283 0.35 +1.2
309,080 + Atu3283 0.35 -0.1
309,081 - Atu3283 0.35 -1.1
309,088 - Atu3283 0.36 +0.0
309,088 - Atu3283 0.36 -0.0
309,088 - Atu3283 0.36 -0.6
309,088 - Atu3283 0.36 +0.1
309,102 + Atu3283 0.37 +0.2
309,136 + Atu3283 0.41 +0.6
309,164 + Atu3283 0.44 +0.4
309,172 + Atu3283 0.45 +0.5
309,213 + Atu3283 0.49 -0.7
309,223 + Atu3283 0.50 -0.5
309,223 + Atu3283 0.50 +0.6
309,385 + Atu3283 0.68 +0.4
309,446 - Atu3283 0.74 -0.9
309,502 - Atu3283 0.80 -0.2
309,550 - Atu3283 0.85 +0.7
309,556 + Atu3283 0.86 +0.2
309,567 + Atu3283 0.87 -0.2
309,573 - Atu3283 0.88 -0.8
309,575 - Atu3283 0.88 +1.2
309,609 - -0.4
309,678 + +0.6
309,694 - -0.6
309,721 - +2.2
309,833 - Atu3284 0.17 +0.2
309,845 - Atu3284 0.18 +0.2
309,923 + Atu3284 0.27 -0.1
309,923 - Atu3284 0.27 -0.9
309,944 + Atu3284 0.30 +0.6
309,957 - Atu3284 0.31 +0.5
310,019 - Atu3284 0.38 -0.3
310,123 - Atu3284 0.51 +0.5
310,141 - Atu3284 0.53 -0.1
310,144 + Atu3284 0.53 +1.2
310,152 - Atu3284 0.54 +2.7
310,152 - Atu3284 0.54 -0.8
310,154 + Atu3284 0.54 +1.4
310,163 + Atu3284 0.55 +0.9
310,264 + Atu3284 0.67 +0.1
310,264 + Atu3284 0.67 +0.2
310,264 + Atu3284 0.67 +0.5
310,264 + Atu3284 0.67 -0.4
310,264 + Atu3284 0.67 -0.7
310,272 - Atu3284 0.68 +1.6
310,272 - Atu3284 0.68 +2.6
310,332 + Atu3284 0.75 +0.2
310,342 + Atu3284 0.76 -0.4
310,359 + Atu3284 0.78 -0.2
310,511 + -0.5
310,541 + +0.0
310,548 + +0.2
310,556 - +0.0
310,701 + +0.5
310,714 - +0.3
310,716 - +0.6
310,718 + +0.1
310,723 + -0.9
310,731 - -1.4
310,831 + Atu3285 0.14 -0.6
310,981 - Atu3285 0.21 +0.4
311,011 - Atu3285 0.23 +0.2
311,066 + Atu3285 0.25 -0.7
311,124 - Atu3285 0.28 +0.3
311,154 + Atu3285 0.30 +0.1
311,263 + Atu3285 0.35 +0.5
311,320 + Atu3285 0.38 -1.4
311,372 + Atu3285 0.41 +0.9
311,373 + Atu3285 0.41 -0.4
311,380 - Atu3285 0.41 -1.4
311,391 - Atu3285 0.42 +0.2
311,441 + Atu3285 0.44 +0.1
311,441 + Atu3285 0.44 +0.1
311,449 - Atu3285 0.45 +2.2
311,449 - Atu3285 0.45 -0.2

Or see this region's nucleotide sequence