Experiment: Bethi_Library_OD0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1982 and Atu1983 overlap by 4 nucleotides Atu1983 and Atu1984 are separated by 84 nucleotides Atu1984 and Atu1985 are separated by 4 nucleotides Atu1985 and Atu1986 overlap by 4 nucleotides
Atu1982: Atu1982 - sigma factor, at 1,947,933 to 1,948,475
Atu1982
Atu1983: Atu1983 - hypothetical protein, at 1,948,472 to 1,949,182
Atu1983
Atu1984: Atu1984 - two component sensor kinase, at 1,949,267 to 1,950,307
Atu1984
Atu1985: Atu1985 - two component response regulator, at 1,950,312 to 1,950,749
Atu1985
Atu1986: Atu1986 - two component sensor kinase, at 1,950,746 to 1,952,200
Atu1986
Position (kb) 1949
1950
1951 Strain fitness (log2 ratio) -1
0
1
2
3 at 1948.300 kb on + strand, within Atu1982 at 1948.308 kb on - strand, within Atu1982 at 1948.318 kb on - strand, within Atu1982 at 1948.350 kb on + strand, within Atu1982 at 1948.373 kb on + strand, within Atu1982 at 1948.376 kb on - strand, within Atu1982 at 1948.378 kb on + strand, within Atu1982 at 1948.378 kb on + strand, within Atu1982 at 1948.402 kb on + strand, within Atu1982 at 1948.403 kb on - strand, within Atu1982 at 1948.460 kb on - strand at 1948.538 kb on - strand at 1948.676 kb on - strand, within Atu1983 at 1948.750 kb on - strand, within Atu1983 at 1948.770 kb on + strand, within Atu1983 at 1948.778 kb on - strand, within Atu1983 at 1948.984 kb on + strand, within Atu1983 at 1948.992 kb on - strand, within Atu1983 at 1949.111 kb on + strand, within Atu1983 at 1949.216 kb on + strand at 1949.243 kb on + strand at 1949.273 kb on - strand at 1949.331 kb on - strand at 1949.343 kb on - strand at 1949.349 kb on + strand at 1949.380 kb on - strand, within Atu1984 at 1949.531 kb on - strand, within Atu1984 at 1949.531 kb on - strand, within Atu1984 at 1949.642 kb on - strand, within Atu1984 at 1949.700 kb on + strand, within Atu1984 at 1949.700 kb on + strand, within Atu1984 at 1949.708 kb on - strand, within Atu1984 at 1949.708 kb on - strand, within Atu1984 at 1949.722 kb on + strand, within Atu1984 at 1949.937 kb on - strand, within Atu1984 at 1949.937 kb on - strand, within Atu1984 at 1950.041 kb on + strand, within Atu1984 at 1950.159 kb on + strand, within Atu1984 at 1950.228 kb on - strand at 1950.228 kb on - strand at 1950.228 kb on - strand at 1950.228 kb on - strand at 1950.317 kb on - strand at 1950.488 kb on + strand, within Atu1985 at 1950.773 kb on + strand at 1950.779 kb on - strand at 1950.804 kb on - strand at 1950.831 kb on + strand at 1951.024 kb on - strand, within Atu1986 at 1951.182 kb on + strand, within Atu1986 at 1951.182 kb on + strand, within Atu1986 at 1951.182 kb on + strand, within Atu1986 at 1951.265 kb on - strand, within Atu1986 at 1951.277 kb on - strand, within Atu1986
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.1 remove 1,948,300 + Atu1982 0.68 +0.8 1,948,308 - Atu1982 0.69 +0.5 1,948,318 - Atu1982 0.71 -0.1 1,948,350 + Atu1982 0.77 +0.6 1,948,373 + Atu1982 0.81 -0.3 1,948,376 - Atu1982 0.82 -0.5 1,948,378 + Atu1982 0.82 +0.3 1,948,378 + Atu1982 0.82 +0.0 1,948,402 + Atu1982 0.86 -0.1 1,948,403 - Atu1982 0.87 +1.3 1,948,460 - -0.6 1,948,538 - -0.1 1,948,676 - Atu1983 0.29 +1.1 1,948,750 - Atu1983 0.39 +0.4 1,948,770 + Atu1983 0.42 -0.2 1,948,778 - Atu1983 0.43 +0.0 1,948,984 + Atu1983 0.72 +0.3 1,948,992 - Atu1983 0.73 -0.0 1,949,111 + Atu1983 0.90 -0.3 1,949,216 + -0.2 1,949,243 + -0.1 1,949,273 - +0.3 1,949,331 - -1.7 1,949,343 - -0.8 1,949,349 + +0.4 1,949,380 - Atu1984 0.11 -1.1 1,949,531 - Atu1984 0.25 +1.1 1,949,531 - Atu1984 0.25 -0.6 1,949,642 - Atu1984 0.36 -1.0 1,949,700 + Atu1984 0.42 -0.7 1,949,700 + Atu1984 0.42 -1.4 1,949,708 - Atu1984 0.42 -1.7 1,949,708 - Atu1984 0.42 -1.0 1,949,722 + Atu1984 0.44 +0.3 1,949,937 - Atu1984 0.64 -0.3 1,949,937 - Atu1984 0.64 -0.9 1,950,041 + Atu1984 0.74 +0.4 1,950,159 + Atu1984 0.86 +1.3 1,950,228 - +1.3 1,950,228 - +3.3 1,950,228 - -0.3 1,950,228 - +0.8 1,950,317 - -0.9 1,950,488 + Atu1985 0.40 -0.1 1,950,773 + -0.3 1,950,779 - +0.1 1,950,804 - +0.4 1,950,831 + +0.3 1,951,024 - Atu1986 0.19 +0.8 1,951,182 + Atu1986 0.30 -0.7 1,951,182 + Atu1986 0.30 +0.5 1,951,182 + Atu1986 0.30 +1.8 1,951,265 - Atu1986 0.36 +0.5 1,951,277 - Atu1986 0.36 +1.3
Or see this region's nucleotide sequence