Experiment: Bethi_Library_OD0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5533 and Atu5534 are separated by 1 nucleotides Atu5534 and Atu5535 overlap by 1 nucleotides Atu5535 and Atu5536 are separated by 37 nucleotides
Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422
Atu5533
Atu5534: Atu5534 - ABC transporter nucleotide binding/ATPase, at 528,424 to 529,173
Atu5534
Atu5535: Atu5535 - ABC transporter nucleotide binding/ATPase, at 529,173 to 529,868
Atu5535
Atu5536: Atu5536 - amidohydrolase, at 529,906 to 531,645
Atu5536
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 527.424 kb on + strand, within Atu5533 at 527.514 kb on - strand, within Atu5533 at 527.528 kb on - strand, within Atu5533 at 527.676 kb on - strand, within Atu5533 at 527.682 kb on - strand, within Atu5533 at 527.767 kb on + strand, within Atu5533 at 527.785 kb on - strand, within Atu5533 at 527.808 kb on - strand, within Atu5533 at 527.832 kb on + strand, within Atu5533 at 527.893 kb on + strand, within Atu5533 at 527.901 kb on - strand, within Atu5533 at 527.908 kb on + strand, within Atu5533 at 527.930 kb on + strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 527.999 kb on - strand, within Atu5533 at 528.024 kb on - strand, within Atu5533 at 528.047 kb on - strand, within Atu5533 at 528.094 kb on - strand, within Atu5533 at 528.100 kb on + strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.163 kb on - strand, within Atu5533 at 528.165 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.237 kb on - strand, within Atu5533 at 528.263 kb on + strand, within Atu5533 at 528.345 kb on - strand at 528.368 kb on + strand at 528.531 kb on + strand, within Atu5534 at 528.600 kb on + strand, within Atu5534 at 528.608 kb on - strand, within Atu5534 at 528.722 kb on + strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.819 kb on - strand, within Atu5534 at 528.874 kb on - strand, within Atu5534 at 528.884 kb on + strand, within Atu5534 at 528.902 kb on - strand, within Atu5534 at 528.939 kb on + strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.979 kb on + strand, within Atu5534 at 528.987 kb on - strand, within Atu5534 at 529.018 kb on - strand, within Atu5534 at 529.043 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.117 kb on + strand at 529.125 kb on - strand at 529.156 kb on - strand at 529.204 kb on - strand at 529.204 kb on - strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.301 kb on + strand, within Atu5535 at 529.301 kb on + strand, within Atu5535 at 529.309 kb on + strand, within Atu5535 at 529.364 kb on - strand, within Atu5535 at 529.397 kb on + strand, within Atu5535 at 529.401 kb on + strand, within Atu5535 at 529.416 kb on + strand, within Atu5535 at 529.421 kb on + strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.429 kb on - strand, within Atu5535 at 529.474 kb on + strand, within Atu5535 at 529.546 kb on + strand, within Atu5535 at 529.556 kb on + strand, within Atu5535 at 529.607 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.657 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.842 kb on - strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.854 kb on + strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.872 kb on - strand at 529.920 kb on + strand at 529.928 kb on - strand at 529.942 kb on - strand at 530.026 kb on + strand at 530.036 kb on - strand at 530.059 kb on + strand at 530.093 kb on - strand, within Atu5536 at 530.108 kb on + strand, within Atu5536 at 530.167 kb on - strand, within Atu5536
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.1 remove 527,424 + Atu5533 0.12 +0.3 527,514 - Atu5533 0.20 -0.5 527,528 - Atu5533 0.21 -0.3 527,676 - Atu5533 0.34 -1.1 527,682 - Atu5533 0.35 +0.3 527,767 + Atu5533 0.42 +0.7 527,785 - Atu5533 0.44 +0.3 527,808 - Atu5533 0.46 +0.2 527,832 + Atu5533 0.48 +0.0 527,893 + Atu5533 0.54 +2.3 527,901 - Atu5533 0.54 -1.7 527,908 + Atu5533 0.55 +0.3 527,930 + Atu5533 0.57 -0.5 527,999 - Atu5533 0.63 -0.2 527,999 - Atu5533 0.63 -0.5 527,999 - Atu5533 0.63 -1.1 528,024 - Atu5533 0.65 -0.5 528,047 - Atu5533 0.67 -0.3 528,094 - Atu5533 0.71 +0.2 528,100 + Atu5533 0.72 +0.4 528,163 - Atu5533 0.77 +1.5 528,163 - Atu5533 0.77 -0.0 528,165 + Atu5533 0.77 -0.3 528,210 + Atu5533 0.81 +0.5 528,210 + Atu5533 0.81 +0.0 528,218 - Atu5533 0.82 -0.1 528,218 - Atu5533 0.82 +1.3 528,237 - Atu5533 0.84 -0.3 528,263 + Atu5533 0.86 +0.5 528,345 - -0.1 528,368 + +0.5 528,531 + Atu5534 0.14 -1.2 528,600 + Atu5534 0.23 -0.5 528,608 - Atu5534 0.25 -1.1 528,722 + Atu5534 0.40 +0.5 528,754 - Atu5534 0.44 -0.3 528,754 - Atu5534 0.44 -0.7 528,819 - Atu5534 0.53 -0.5 528,874 - Atu5534 0.60 +0.1 528,884 + Atu5534 0.61 -0.7 528,902 - Atu5534 0.64 -1.1 528,939 + Atu5534 0.69 +0.3 528,977 - Atu5534 0.74 -0.8 528,977 - Atu5534 0.74 +0.5 528,979 + Atu5534 0.74 -1.5 528,987 - Atu5534 0.75 -0.2 529,018 - Atu5534 0.79 -0.4 529,043 - Atu5534 0.83 +1.7 529,098 - Atu5534 0.90 -1.3 529,098 - Atu5534 0.90 -0.8 529,117 + -0.1 529,125 - +0.1 529,156 - -0.0 529,204 - -2.1 529,204 - -0.6 529,228 + -0.8 529,228 + +0.7 529,228 + -0.1 529,236 - -2.5 529,236 - +0.2 529,236 - -0.0 529,301 + Atu5535 0.18 +0.1 529,301 + Atu5535 0.18 +0.0 529,309 + Atu5535 0.20 -0.5 529,364 - Atu5535 0.27 -0.6 529,397 + Atu5535 0.32 +0.7 529,401 + Atu5535 0.33 +0.5 529,416 + Atu5535 0.35 -0.1 529,421 + Atu5535 0.36 -3.0 529,424 - Atu5535 0.36 -0.1 529,424 - Atu5535 0.36 -0.1 529,429 - Atu5535 0.37 +0.6 529,474 + Atu5535 0.43 +0.1 529,546 + Atu5535 0.54 +1.5 529,556 + Atu5535 0.55 -1.1 529,607 + Atu5535 0.62 -0.3 529,622 + Atu5535 0.65 -0.4 529,622 + Atu5535 0.65 -0.2 529,657 - Atu5535 0.70 +0.7 529,672 - Atu5535 0.72 +0.9 529,672 - Atu5535 0.72 -0.1 529,768 + Atu5535 0.85 +0.0 529,768 + Atu5535 0.85 -1.0 529,842 - -0.3 529,853 + -0.5 529,853 + +0.6 529,853 + -0.3 529,854 + -0.4 529,861 - +0.4 529,861 - +0.5 529,861 - +0.2 529,872 - -0.1 529,920 + +0.3 529,928 - -0.1 529,942 - -0.4 530,026 + -1.6 530,036 - +0.2 530,059 + +0.6 530,093 - Atu5536 0.11 -0.1 530,108 + Atu5536 0.12 -0.2 530,167 - Atu5536 0.15 +1.5
Or see this region's nucleotide sequence