Strain Fitness in Agrobacterium fabrum C58 around Atu2500

Experiment: Bethi_Library_OD0.05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.05
2,467,980	+		Atu2498	0.41	-0.1
2,468,028	+		Atu2498	0.53	+0.1
2,468,084	+		Atu2498	0.68	+0.7
2,468,092	-		Atu2498	0.70	-0.0
2,468,168	+		Atu2498	0.89	+0.2
2,468,490	+		Atu2499	0.34	+0.1
2,468,537	+		Atu2499	0.41	-0.8
2,468,590	+		Atu2499	0.48	+0.5
2,468,590	+		Atu2499	0.48	-0.8
2,468,590	-		Atu2499	0.48	+0.5
2,468,600	+		Atu2499	0.49	-0.1
2,468,610	-		Atu2499	0.51	+0.8
2,468,615	-		Atu2499	0.51	+1.1
2,468,644	+		Atu2499	0.55	+0.1
2,468,652	-		Atu2499	0.56	+0.6
2,468,689	+		Atu2499	0.61	-0.7
2,468,689	+		Atu2499	0.61	-0.9
2,468,697	-		Atu2499	0.62	+0.9
2,468,882	+		Atu2499	0.87	-0.7
2,468,965	+				-0.5
2,468,996	-				-0.3
2,469,062	-				-2.1
2,469,067	+				+0.2
2,469,067	+				+0.8
2,469,074	+				+0.3
2,469,075	-				-0.1
2,469,187	+		Atu2500	0.20	-0.8
2,469,194	-		Atu2500	0.20	-0.5
2,469,194	-		Atu2500	0.20	-0.1
2,469,194	-		Atu2500	0.20	-0.5
2,469,194	-		Atu2500	0.20	+0.1
2,469,282	+		Atu2500	0.28	+0.2
2,469,290	-		Atu2500	0.29	-0.9
2,469,290	-		Atu2500	0.29	-1.7
2,469,431	-		Atu2500	0.42	-0.6
2,469,499	+		Atu2500	0.48	+1.1
2,469,509	+		Atu2500	0.49	+1.5
2,469,544	+		Atu2500	0.52	-0.0
2,469,620	+		Atu2500	0.59	-0.2
2,469,807	+		Atu2500	0.76	-0.6
2,469,815	-		Atu2500	0.77	-0.1
2,469,969	+				+0.0
2,469,987	-				+0.7
2,469,995	+				+1.5
2,469,995	+				+0.2
2,470,027	+				+1.8
2,470,088	+				+0.4
2,470,300	+				-0.2
2,470,307	+				+0.2
2,470,307	+				-0.8
2,470,308	-				+0.2
2,470,323	-				-0.5
2,470,326	+				-0.0
2,470,326	+				-0.8
2,470,334	-				-0.5
2,470,334	-				+1.2
2,470,334	-				-0.1
2,470,336	+				+0.9
2,470,339	-				+0.8
2,470,400	-				-1.7
2,470,444	-				-0.3
2,470,490	+				-0.4
2,470,490	+				-0.9
2,470,490	+				+0.3
2,470,498	-				+0.1
2,470,498	-				+0.9
2,470,498	-				-0.0
2,470,498	-				+0.9
2,470,656	+		Atu2502	0.31	-0.1
2,470,715	+		Atu2502	0.41	-0.3
2,470,719	-		Atu2502	0.41	+0.1
2,470,719	-		Atu2502	0.41	+1.2
2,470,807	+		Atu2502	0.56	+1.7
2,470,808	+		Atu2502	0.56	-0.3
2,470,833	+		Atu2502	0.60	+0.9
2,470,965	-		Atu2502	0.82	+0.4
2,471,018	-				-0.6
2,471,062	+				-0.1