Strain Fitness in Agrobacterium fabrum C58 around Atu1318

Experiment: Bethi_Library_OD0.05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1317 and Atu1318 are separated by 126 nucleotidesAtu1318 and Atu1319 are separated by 56 nucleotides Atu1317: Atu1317 - metal dependent hydrolase, at 1,307,339 to 1,308,439 Atu1317 Atu1318: Atu1318 - glutamyl-tRNA-Gln-amidotransferase chain C, at 1,308,566 to 1,308,853 Atu1318 Atu1319: Atu1319 - glutamyl-tRNA amidotransferase subunit A, at 1,308,910 to 1,310,391 Atu1319 Position (kb) 1308 1309Strain fitness (log2 ratio) -1 0 1at 1307.707 kb on + strand, within Atu1317at 1307.729 kb on - strand, within Atu1317at 1307.863 kb on - strand, within Atu1317at 1307.876 kb on + strand, within Atu1317at 1308.007 kb on + strand, within Atu1317at 1308.039 kb on + strand, within Atu1317at 1308.080 kb on - strand, within Atu1317at 1308.200 kb on - strand, within Atu1317

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05
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1,307,707 + Atu1317 0.33 -0.4
1,307,729 - Atu1317 0.35 +1.4
1,307,863 - Atu1317 0.48 +0.1
1,307,876 + Atu1317 0.49 +0.4
1,308,007 + Atu1317 0.61 +0.2
1,308,039 + Atu1317 0.64 -0.6
1,308,080 - Atu1317 0.67 -1.1
1,308,200 - Atu1317 0.78 +0.5

Or see this region's nucleotide sequence