Strain Fitness in Agrobacterium fabrum C58 around Atu8170

Experiment: Bethi_Library_OD0.05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2046 and Atu2047 overlap by 4 nucleotidesAtu2047 and Atu8170 are separated by 92 nucleotidesAtu8170 and Atu8171 are separated by 741 nucleotides Atu2046: Atu2046 - dihydrofolate reductase, at 2,005,331 to 2,005,858 Atu2046 Atu2047: Atu2047 - thymidylate synthase, at 2,005,855 to 2,006,649 Atu2047 Atu8170: Atu8170 - hypothetical protein, at 2,006,742 to 2,007,050 Atu8170 Atu8171: Atu8171 - hypothetical protein, at 2,007,792 to 2,008,298 Atu8171 Position (kb) 2006 2007 2008Strain fitness (log2 ratio) -2 -1 0 1at 2006.694 kb on - strandat 2006.735 kb on + strandat 2006.743 kb on - strandat 2006.748 kb on - strandat 2006.784 kb on + strand, within Atu8170at 2006.867 kb on - strand, within Atu8170at 2006.896 kb on + strand, within Atu8170at 2006.923 kb on - strand, within Atu8170at 2007.087 kb on - strandat 2007.562 kb on - strandat 2007.563 kb on - strandat 2007.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05
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2,006,694 - -2.3
2,006,735 + -0.4
2,006,743 - +0.1
2,006,748 - +0.0
2,006,784 + Atu8170 0.14 -1.6
2,006,867 - Atu8170 0.40 +0.4
2,006,896 + Atu8170 0.50 +0.3
2,006,923 - Atu8170 0.59 +1.2
2,007,087 - -0.1
2,007,562 - -0.0
2,007,563 - +0.1
2,007,583 + +0.1

Or see this region's nucleotide sequence