Strain Fitness in Agrobacterium fabrum C58 around Atu6167

Experiment: Bethi_Library_OD0.05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6166 and Atu6167 are separated by 544 nucleotidesAtu6167 and Atu6168 overlap by 1 nucleotidesAtu6168 and Atu6169 overlap by 1 nucleotidesAtu6169 and Atu6170 overlap by 1 nucleotides Atu6166: Atu6166 - two component sensor kinase, at 180,831 to 183,332 Atu6166 Atu6167: Atu6167 - component of type IV secretion system, at 183,877 to 184,614 Atu6167 Atu6168: Atu6168 - component of type IV secretion system, pilin subunit, at 184,614 to 184,979 Atu6168 Atu6169: Atu6169 - component of type IV secretion system, at 184,979 to 185,305 Atu6169 Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674 Atu6170 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 182.877 kb on + strand, within Atu6166at 182.891 kb on - strand, within Atu6166at 182.946 kb on - strand, within Atu6166at 182.960 kb on + strand, within Atu6166at 182.960 kb on + strand, within Atu6166at 182.962 kb on + strand, within Atu6166at 182.962 kb on + strand, within Atu6166at 182.962 kb on + strand, within Atu6166at 182.962 kb on + strand, within Atu6166at 182.962 kb on + strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.968 kb on - strand, within Atu6166at 182.999 kb on + strand, within Atu6166at 183.005 kb on + strand, within Atu6166at 183.010 kb on + strand, within Atu6166at 183.020 kb on + strand, within Atu6166at 183.027 kb on - strand, within Atu6166at 183.048 kb on + strand, within Atu6166at 183.073 kb on - strand, within Atu6166at 183.082 kb on + strandat 183.090 kb on - strandat 183.090 kb on - strandat 183.090 kb on - strandat 183.090 kb on - strandat 183.174 kb on + strandat 183.174 kb on + strandat 183.186 kb on + strandat 183.186 kb on + strandat 183.196 kb on - strandat 183.196 kb on - strandat 183.277 kb on + strandat 183.287 kb on - strandat 183.307 kb on - strandat 183.335 kb on - strandat 183.376 kb on + strandat 183.384 kb on - strandat 183.391 kb on + strandat 183.460 kb on + strandat 183.462 kb on - strandat 183.508 kb on + strandat 183.516 kb on - strandat 183.516 kb on - strandat 183.591 kb on + strandat 183.591 kb on + strandat 183.599 kb on - strandat 183.677 kb on - strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.716 kb on + strandat 183.723 kb on - strandat 183.723 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.724 kb on - strandat 183.794 kb on - strandat 183.811 kb on + strandat 183.819 kb on - strandat 183.837 kb on - strandat 183.847 kb on + strandat 183.859 kb on + strandat 183.861 kb on - strandat 183.868 kb on - strandat 183.872 kb on + strandat 183.900 kb on + strandat 183.915 kb on + strandat 183.941 kb on - strandat 183.946 kb on - strandat 183.995 kb on + strand, within Atu6167at 184.003 kb on - strand, within Atu6167at 184.008 kb on - strand, within Atu6167at 184.029 kb on + strand, within Atu6167at 184.037 kb on - strand, within Atu6167at 184.048 kb on - strand, within Atu6167at 184.048 kb on - strand, within Atu6167at 184.053 kb on - strand, within Atu6167at 184.065 kb on - strand, within Atu6167at 184.065 kb on - strand, within Atu6167at 184.120 kb on + strand, within Atu6167at 184.124 kb on - strand, within Atu6167at 184.156 kb on - strand, within Atu6167at 184.160 kb on + strand, within Atu6167at 184.160 kb on + strand, within Atu6167at 184.207 kb on - strand, within Atu6167at 184.207 kb on - strand, within Atu6167at 184.218 kb on + strand, within Atu6167at 184.224 kb on + strand, within Atu6167at 184.225 kb on - strand, within Atu6167at 184.227 kb on - strand, within Atu6167at 184.266 kb on + strand, within Atu6167at 184.284 kb on - strand, within Atu6167at 184.355 kb on + strand, within Atu6167at 184.355 kb on + strand, within Atu6167at 184.391 kb on + strand, within Atu6167at 184.418 kb on - strand, within Atu6167at 184.454 kb on - strand, within Atu6167at 184.488 kb on - strand, within Atu6167at 184.503 kb on + strand, within Atu6167at 184.503 kb on + strand, within Atu6167at 184.511 kb on - strand, within Atu6167at 184.578 kb on + strandat 184.676 kb on + strand, within Atu6168at 184.679 kb on - strand, within Atu6168at 184.679 kb on - strand, within Atu6168at 184.683 kb on + strand, within Atu6168at 184.683 kb on + strand, within Atu6168at 184.683 kb on + strand, within Atu6168at 184.709 kb on - strand, within Atu6168at 184.711 kb on + strand, within Atu6168at 184.711 kb on + strand, within Atu6168at 184.711 kb on + strand, within Atu6168at 184.711 kb on + strand, within Atu6168at 184.719 kb on - strand, within Atu6168at 184.719 kb on - strand, within Atu6168at 184.719 kb on - strand, within Atu6168at 184.722 kb on - strand, within Atu6168at 184.735 kb on + strand, within Atu6168at 184.776 kb on + strand, within Atu6168at 184.784 kb on - strand, within Atu6168at 184.791 kb on - strand, within Atu6168at 184.807 kb on + strand, within Atu6168at 184.807 kb on + strand, within Atu6168at 184.842 kb on + strand, within Atu6168at 184.964 kb on + strandat 184.972 kb on - strandat 185.006 kb on - strandat 185.116 kb on + strand, within Atu6169at 185.129 kb on + strand, within Atu6169at 185.129 kb on + strand, within Atu6169at 185.221 kb on - strand, within Atu6169at 185.221 kb on - strand, within Atu6169at 185.236 kb on + strand, within Atu6169at 185.236 kb on + strand, within Atu6169at 185.247 kb on + strand, within Atu6169at 185.255 kb on - strand, within Atu6169at 185.295 kb on - strandat 185.307 kb on + strandat 185.326 kb on + strandat 185.334 kb on - strandat 185.338 kb on + strandat 185.341 kb on - strandat 185.341 kb on - strandat 185.341 kb on - strandat 185.346 kb on - strandat 185.362 kb on + strandat 185.362 kb on - strandat 185.377 kb on - strandat 185.384 kb on - strandat 185.427 kb on + strandat 185.543 kb on - strand, within Atu6170

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Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05
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182,877 + Atu6166 0.82 -1.4
182,891 - Atu6166 0.82 -2.0
182,946 - Atu6166 0.85 -0.9
182,960 + Atu6166 0.85 -1.2
182,960 + Atu6166 0.85 -0.8
182,962 + Atu6166 0.85 -0.2
182,962 + Atu6166 0.85 -1.7
182,962 + Atu6166 0.85 -2.8
182,962 + Atu6166 0.85 -1.1
182,962 + Atu6166 0.85 -2.7
182,968 - Atu6166 0.85 -0.5
182,968 - Atu6166 0.85 -0.9
182,968 - Atu6166 0.85 -1.1
182,968 - Atu6166 0.85 -2.2
182,968 - Atu6166 0.85 -1.7
182,968 - Atu6166 0.85 -0.7
182,968 - Atu6166 0.85 -1.0
182,999 + Atu6166 0.87 +0.6
183,005 + Atu6166 0.87 -0.1
183,010 + Atu6166 0.87 -0.7
183,020 + Atu6166 0.87 -0.2
183,027 - Atu6166 0.88 -1.5
183,048 + Atu6166 0.89 -1.2
183,073 - Atu6166 0.90 -2.0
183,082 + -1.4
183,090 - -1.7
183,090 - -1.4
183,090 - -1.6
183,090 - -2.2
183,174 + -0.9
183,174 + +2.3
183,186 + +0.9
183,186 + -0.7
183,196 - -1.8
183,196 - -2.5
183,277 + -0.6
183,287 - -1.0
183,307 - -1.5
183,335 - +0.2
183,376 + +1.1
183,384 - -0.3
183,391 + +0.3
183,460 + +1.7
183,462 - -0.7
183,508 + -0.3
183,516 - +0.1
183,516 - -0.2
183,591 + -1.4
183,591 + +0.7
183,599 - +1.3
183,677 - -0.2
183,716 + -0.9
183,716 + -0.5
183,716 + -0.2
183,716 + -0.4
183,716 + -0.6
183,716 + -0.9
183,716 + +0.4
183,716 + -0.4
183,723 - +0.5
183,723 - -1.3
183,724 - -0.3
183,724 - -0.4
183,724 - +0.8
183,724 - +0.4
183,724 - +0.7
183,724 - +0.8
183,724 - -0.1
183,724 - +0.3
183,794 - +3.3
183,811 + +1.3
183,819 - +1.0
183,837 - +0.3
183,847 + +0.7
183,859 + +0.7
183,861 - +1.0
183,868 - +0.5
183,872 + +1.1
183,900 + +0.4
183,915 + -0.1
183,941 - +1.2
183,946 - +1.0
183,995 + Atu6167 0.16 -0.0
184,003 - Atu6167 0.17 +1.5
184,008 - Atu6167 0.18 +0.1
184,029 + Atu6167 0.21 +0.6
184,037 - Atu6167 0.22 +1.8
184,048 - Atu6167 0.23 +0.0
184,048 - Atu6167 0.23 +0.3
184,053 - Atu6167 0.24 +0.8
184,065 - Atu6167 0.25 +1.5
184,065 - Atu6167 0.25 +1.7
184,120 + Atu6167 0.33 +1.1
184,124 - Atu6167 0.33 +0.6
184,156 - Atu6167 0.38 -0.0
184,160 + Atu6167 0.38 -2.7
184,160 + Atu6167 0.38 +1.3
184,207 - Atu6167 0.45 -0.0
184,207 - Atu6167 0.45 +0.4
184,218 + Atu6167 0.46 +0.9
184,224 + Atu6167 0.47 +0.7
184,225 - Atu6167 0.47 +0.5
184,227 - Atu6167 0.47 +2.6
184,266 + Atu6167 0.53 +0.8
184,284 - Atu6167 0.55 +0.2
184,355 + Atu6167 0.65 +0.4
184,355 + Atu6167 0.65 +0.5
184,391 + Atu6167 0.70 +0.4
184,418 - Atu6167 0.73 +0.6
184,454 - Atu6167 0.78 +0.5
184,488 - Atu6167 0.83 +0.2
184,503 + Atu6167 0.85 +0.2
184,503 + Atu6167 0.85 +0.4
184,511 - Atu6167 0.86 +1.5
184,578 + -1.3
184,676 + Atu6168 0.17 +0.7
184,679 - Atu6168 0.18 +0.6
184,679 - Atu6168 0.18 +1.7
184,683 + Atu6168 0.19 +0.6
184,683 + Atu6168 0.19 +0.5
184,683 + Atu6168 0.19 +0.1
184,709 - Atu6168 0.26 +1.3
184,711 + Atu6168 0.27 +1.0
184,711 + Atu6168 0.27 +0.9
184,711 + Atu6168 0.27 +0.5
184,711 + Atu6168 0.27 +0.8
184,719 - Atu6168 0.29 +0.3
184,719 - Atu6168 0.29 +2.2
184,719 - Atu6168 0.29 +1.3
184,722 - Atu6168 0.30 -0.7
184,735 + Atu6168 0.33 +2.3
184,776 + Atu6168 0.44 +0.3
184,784 - Atu6168 0.46 +0.7
184,791 - Atu6168 0.48 +0.1
184,807 + Atu6168 0.53 -0.3
184,807 + Atu6168 0.53 +0.5
184,842 + Atu6168 0.62 +1.1
184,964 + +0.5
184,972 - +0.3
185,006 - +0.2
185,116 + Atu6169 0.42 -0.2
185,129 + Atu6169 0.46 +0.6
185,129 + Atu6169 0.46 +1.0
185,221 - Atu6169 0.74 +0.5
185,221 - Atu6169 0.74 +0.0
185,236 + Atu6169 0.79 +0.8
185,236 + Atu6169 0.79 -0.3
185,247 + Atu6169 0.82 +0.4
185,255 - Atu6169 0.84 +0.5
185,295 - +0.1
185,307 + +0.3
185,326 + +0.3
185,334 - +0.1
185,338 + +0.8
185,341 - -0.1
185,341 - -0.5
185,341 - +0.6
185,346 - -0.1
185,362 + -0.4
185,362 - +0.7
185,377 - +0.5
185,384 - +0.4
185,427 + +0.5
185,543 - Atu6170 0.10 +0.1

Or see this region's nucleotide sequence