Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3428 and Atu3429 are separated by 201 nucleotides Atu3429 and Atu3430 overlap by 4 nucleotides Atu3430 and Atu3431 are separated by 57 nucleotides
Atu3428: Atu3428 - hypothetical protein, at 474,470 to 475,087
Atu3428
Atu3429: Atu3429 - hypothetical protein, at 475,289 to 475,477
Atu3429
Atu3430: Atu3430 - alkanesulfonate monooxygenase, at 475,474 to 476,544
Atu3430
Atu3431: Atu3431 - acyl-CoA dehydrogenase, at 476,602 to 477,780
Atu3431
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 474.489 kb on + strand at 474.537 kb on - strand, within Atu3428 at 474.572 kb on + strand, within Atu3428 at 474.628 kb on + strand, within Atu3428 at 474.724 kb on + strand, within Atu3428 at 474.777 kb on + strand, within Atu3428 at 474.792 kb on + strand, within Atu3428 at 474.816 kb on + strand, within Atu3428 at 474.834 kb on + strand, within Atu3428 at 474.880 kb on - strand, within Atu3428 at 474.946 kb on + strand, within Atu3428 at 475.053 kb on - strand at 475.063 kb on - strand at 475.088 kb on - strand at 475.092 kb on + strand at 475.433 kb on + strand, within Atu3429 at 475.471 kb on + strand at 475.515 kb on + strand at 475.621 kb on + strand, within Atu3430 at 475.653 kb on - strand, within Atu3430 at 475.664 kb on + strand, within Atu3430 at 475.683 kb on + strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.732 kb on - strand, within Atu3430 at 475.857 kb on + strand, within Atu3430 at 475.859 kb on - strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.899 kb on + strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.907 kb on - strand, within Atu3430 at 475.931 kb on - strand, within Atu3430 at 475.960 kb on + strand, within Atu3430 at 476.043 kb on - strand, within Atu3430 at 476.073 kb on - strand, within Atu3430 at 476.211 kb on - strand, within Atu3430 at 476.348 kb on - strand, within Atu3430 at 476.664 kb on - strand at 476.813 kb on - strand, within Atu3431 at 476.839 kb on + strand, within Atu3431 at 476.895 kb on + strand, within Atu3431 at 476.903 kb on - strand, within Atu3431 at 476.919 kb on + strand, within Atu3431 at 476.924 kb on + strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.927 kb on - strand, within Atu3431 at 476.937 kb on + strand, within Atu3431 at 476.944 kb on + strand, within Atu3431 at 476.952 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 476.997 kb on + strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.005 kb on - strand, within Atu3431 at 477.019 kb on + strand, within Atu3431 at 477.408 kb on - strand, within Atu3431 at 477.431 kb on + strand, within Atu3431 at 477.440 kb on - strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.491 kb on + strand, within Atu3431 at 477.499 kb on - strand, within Atu3431 at 477.511 kb on - strand, within Atu3431
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 474,489 + -0.1 474,537 - Atu3428 0.11 +0.0 474,572 + Atu3428 0.17 +1.2 474,628 + Atu3428 0.26 -0.5 474,724 + Atu3428 0.41 -1.4 474,777 + Atu3428 0.50 +0.7 474,792 + Atu3428 0.52 -0.2 474,816 + Atu3428 0.56 -0.8 474,834 + Atu3428 0.59 -0.1 474,880 - Atu3428 0.66 +0.0 474,946 + Atu3428 0.77 +0.8 475,053 - +1.2 475,063 - +0.1 475,088 - +0.2 475,092 + +0.2 475,433 + Atu3429 0.76 -0.1 475,471 + +0.8 475,515 + -0.4 475,621 + Atu3430 0.14 -0.8 475,653 - Atu3430 0.17 -0.8 475,664 + Atu3430 0.18 -1.6 475,683 + Atu3430 0.20 +0.2 475,732 - Atu3430 0.24 -0.0 475,732 - Atu3430 0.24 -1.1 475,857 + Atu3430 0.36 -0.2 475,859 - Atu3430 0.36 +0.6 475,899 + Atu3430 0.40 +0.6 475,899 + Atu3430 0.40 -0.2 475,899 + Atu3430 0.40 -1.4 475,907 - Atu3430 0.40 -0.3 475,907 - Atu3430 0.40 -0.1 475,907 - Atu3430 0.40 -1.1 475,907 - Atu3430 0.40 +0.2 475,931 - Atu3430 0.43 -0.5 475,960 + Atu3430 0.45 -0.7 476,043 - Atu3430 0.53 -0.3 476,073 - Atu3430 0.56 -0.4 476,211 - Atu3430 0.69 -0.2 476,348 - Atu3430 0.82 -0.4 476,664 - +0.2 476,813 - Atu3431 0.18 +0.3 476,839 + Atu3431 0.20 -0.0 476,895 + Atu3431 0.25 +0.4 476,903 - Atu3431 0.26 -0.1 476,919 + Atu3431 0.27 -0.2 476,924 + Atu3431 0.27 -0.9 476,927 - Atu3431 0.28 -0.2 476,927 - Atu3431 0.28 -0.1 476,937 + Atu3431 0.28 -0.8 476,944 + Atu3431 0.29 -0.7 476,952 + Atu3431 0.30 -1.9 476,997 + Atu3431 0.34 -0.7 476,997 + Atu3431 0.34 -0.0 477,005 - Atu3431 0.34 +0.4 477,005 - Atu3431 0.34 +0.6 477,019 + Atu3431 0.35 +1.2 477,408 - Atu3431 0.68 +0.8 477,431 + Atu3431 0.70 +0.2 477,440 - Atu3431 0.71 -0.7 477,491 + Atu3431 0.75 +0.1 477,491 + Atu3431 0.75 +0.1 477,499 - Atu3431 0.76 +1.7 477,511 - Atu3431 0.77 -0.0
Or see this region's nucleotide sequence