Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8186 and Atu3307 are separated by 92 nucleotides Atu3307 and Atu3308 overlap by 4 nucleotides
Atu8186: Atu8186 - cellulose synthesis protein, at 332,380 to 334,626
Atu8186
Atu3307: Atu3307 - endoglucanase, at 334,719 to 335,774
Atu3307
Atu3308: Atu3308 - celB protein, at 335,771 to 338,254
Atu3308
Position (kb) 334
335
336 Strain fitness (log2 ratio) -1
0
1
2 at 333.741 kb on + strand, within Atu8186 at 333.845 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.885 kb on - strand, within Atu8186 at 333.950 kb on + strand, within Atu8186 at 334.015 kb on + strand, within Atu8186 at 334.038 kb on + strand, within Atu8186 at 334.053 kb on - strand, within Atu8186 at 334.079 kb on + strand, within Atu8186 at 334.104 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.412 kb on + strand at 334.490 kb on - strand at 334.508 kb on - strand at 334.690 kb on + strand at 334.708 kb on - strand at 334.712 kb on + strand at 334.876 kb on + strand, within Atu3307 at 334.916 kb on - strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.122 kb on + strand, within Atu3307 at 335.140 kb on - strand, within Atu3307 at 335.353 kb on + strand, within Atu3307 at 335.416 kb on - strand, within Atu3307 at 335.470 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.673 kb on - strand at 335.673 kb on - strand at 335.805 kb on - strand at 335.863 kb on + strand at 335.931 kb on + strand at 335.939 kb on - strand at 335.939 kb on - strand at 335.955 kb on + strand at 336.052 kb on + strand, within Atu3308 at 336.153 kb on - strand, within Atu3308 at 336.155 kb on - strand, within Atu3308 at 336.160 kb on - strand, within Atu3308 at 336.176 kb on + strand, within Atu3308 at 336.469 kb on - strand, within Atu3308 at 336.488 kb on - strand, within Atu3308 at 336.590 kb on - strand, within Atu3308 at 336.651 kb on + strand, within Atu3308 at 336.661 kb on + strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.669 kb on - strand, within Atu3308 at 336.717 kb on + strand, within Atu3308 at 336.733 kb on + strand, within Atu3308 at 336.759 kb on + strand, within Atu3308
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 333,741 + Atu8186 0.61 -0.5 333,845 + Atu8186 0.65 -0.4 333,877 + Atu8186 0.67 -0.1 333,877 + Atu8186 0.67 -0.1 333,885 - Atu8186 0.67 +0.1 333,950 + Atu8186 0.70 +1.2 334,015 + Atu8186 0.73 +0.2 334,038 + Atu8186 0.74 -1.2 334,053 - Atu8186 0.74 -0.4 334,079 + Atu8186 0.76 +0.2 334,104 + Atu8186 0.77 -0.7 334,208 + Atu8186 0.81 +0.4 334,208 + Atu8186 0.81 -0.2 334,208 + Atu8186 0.81 -0.4 334,216 - Atu8186 0.82 +2.2 334,216 - Atu8186 0.82 +0.2 334,347 + Atu8186 0.88 -0.5 334,347 + Atu8186 0.88 +0.3 334,412 + -0.3 334,490 - +0.5 334,508 - +0.2 334,690 + +0.9 334,708 - +0.5 334,712 + +0.4 334,876 + Atu3307 0.15 +0.7 334,916 - Atu3307 0.19 +0.5 335,078 + Atu3307 0.34 +0.4 335,078 + Atu3307 0.34 -0.0 335,122 + Atu3307 0.38 +0.3 335,140 - Atu3307 0.40 -0.4 335,353 + Atu3307 0.60 -0.2 335,416 - Atu3307 0.66 +0.0 335,470 - Atu3307 0.71 +0.8 335,583 - Atu3307 0.82 -0.4 335,583 - Atu3307 0.82 +0.1 335,588 - Atu3307 0.82 +1.0 335,588 - Atu3307 0.82 +0.7 335,588 - Atu3307 0.82 -0.8 335,673 - +0.2 335,673 - +1.2 335,805 - +0.8 335,863 + +0.8 335,931 + +0.5 335,939 - +0.1 335,939 - +1.2 335,955 + -0.3 336,052 + Atu3308 0.11 +0.5 336,153 - Atu3308 0.15 +0.4 336,155 - Atu3308 0.15 -0.2 336,160 - Atu3308 0.16 +0.6 336,176 + Atu3308 0.16 +0.1 336,469 - Atu3308 0.28 -0.0 336,488 - Atu3308 0.29 +0.6 336,590 - Atu3308 0.33 +0.9 336,651 + Atu3308 0.35 +0.2 336,661 + Atu3308 0.36 +0.1 336,669 - Atu3308 0.36 -1.4 336,669 - Atu3308 0.36 +0.7 336,717 + Atu3308 0.38 +0.9 336,733 + Atu3308 0.39 +0.8 336,759 + Atu3308 0.40 +0.3
Or see this region's nucleotide sequence