Strain Fitness in Agrobacterium fabrum C58 around Atu2220

Experiment: Bethi_Library_OD0.05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.05
2,187,375	-				+0.3
2,187,375	-				-0.5
2,187,380	+				-1.6
2,187,388	-				-1.1
2,187,435	+				-0.5
2,187,504	+				+0.6
2,187,696	+		Atu8174	0.21	-0.2
2,187,699	-		Atu8174	0.21	+0.7
2,188,166	+		Atu8174	0.77	+0.0
2,188,229	-		Atu8174	0.84	-0.2
2,188,229	-		Atu8174	0.84	-0.4
2,188,277	+		Atu8174	0.90	-0.7
2,188,312	+				+1.3
2,188,441	+				+0.1
2,188,593	-		Atu2220	0.16	+1.2
2,188,757	+		Atu2220	0.27	+0.4
2,188,758	+		Atu2220	0.27	+0.2
2,188,808	-		Atu2220	0.31	+1.3
2,188,913	-		Atu2220	0.38	+0.6
2,189,130	-		Atu2220	0.52	+0.5
2,189,176	-		Atu2220	0.55	+1.6
2,189,335	+		Atu2220	0.66	+0.9
2,189,358	-		Atu2220	0.67	+0.2
2,189,436	+		Atu2220	0.73	-0.1
2,189,456	-		Atu2220	0.74	-0.1
2,189,592	+		Atu2220	0.83	+0.0
2,189,640	-		Atu2220	0.86	-0.2
2,189,648	+		Atu2220	0.87	+1.5
2,189,735	+				+0.0
2,189,753	-				+0.8
2,189,828	-				-1.2
2,189,861	-				-0.2
2,189,895	+		Atu2221	0.20	-0.7
2,189,895	+		Atu2221	0.20	+1.5
2,189,940	+		Atu2221	0.36	+0.6
2,189,948	-		Atu2221	0.39	+0.1
2,190,079	+		Atu2221	0.84	+2.6
2,190,087	-		Atu2221	0.87	+0.2
2,190,205	+				+0.1
2,190,346	+		Atu2222	0.24	-0.1
2,190,367	+		Atu2222	0.27	+0.1
2,190,367	+		Atu2222	0.27	-0.6
2,190,496	+		Atu2222	0.42	-0.8
2,190,632	-		Atu2222	0.58	+0.1
2,190,652	+		Atu2222	0.60	-0.7
2,190,660	+		Atu2222	0.61	+0.1
2,190,822	+		Atu2222	0.81	+0.5
2,190,833	+		Atu2222	0.82	-0.5