Strain Fitness in Agrobacterium fabrum C58 around Atu1435

Experiment: Bethi_Library_OD0.05

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1434 and Atu1435 are separated by 97 nucleotidesAtu1435 and Atu1436 are separated by 103 nucleotides Atu1434: Atu1434 - dihydrolipoamide dehydrogenase, at 1,428,507 to 1,429,952 Atu1434 Atu1435: Atu1435 - hypothetical protein, at 1,430,050 to 1,430,298 Atu1435 Atu1436: Atu1436 - lipoic Acid Synthetase, at 1,430,402 to 1,431,373 Atu1436 Position (kb) 1430 1431Strain fitness (log2 ratio) -1 0 1at 1429.982 kb on - strandat 1430.065 kb on - strandat 1430.168 kb on + strand, within Atu1435at 1430.200 kb on + strand, within Atu1435at 1430.263 kb on - strand, within Atu1435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05
remove
1,429,982 - +0.3
1,430,065 - -0.7
1,430,168 + Atu1435 0.47 +0.5
1,430,200 + Atu1435 0.60 +0.8
1,430,263 - Atu1435 0.86 -1.0

Or see this region's nucleotide sequence