Strain Fitness in Agrobacterium fabrum C58 around Atu1241

Experiment: Bethi_Library_OD0.05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.05
1,230,806	+		Atu1240	0.40	+0.3
1,230,911	-		Atu1240	0.49	+0.1
1,230,967	+		Atu1240	0.53	+0.6
1,230,967	+		Atu1240	0.53	-0.3
1,230,997	+		Atu1240	0.56	+0.9
1,231,005	-		Atu1240	0.56	+2.0
1,231,088	-		Atu1240	0.63	+0.8
1,231,092	+		Atu1240	0.63	+0.1
1,231,092	+		Atu1240	0.63	-0.6
1,231,100	-		Atu1240	0.64	+0.4
1,231,183	+		Atu1240	0.71	+1.8
1,231,319	+		Atu1240	0.82	-0.2
1,231,328	-		Atu1240	0.83	-0.1
1,231,417	-		Atu1240	0.90	+0.2
1,231,511	+				+0.3
1,231,549	+				-1.1
1,231,555	-				-0.6
1,231,702	-		Atu1241	0.30	+0.3
1,231,704	-		Atu1241	0.31	+0.2
1,231,787	+		Atu1241	0.69	+1.0
1,231,840	-				+0.2
1,231,840	-				-2.3
1,231,883	+				+1.2
1,231,911	+				+0.8
1,231,919	-				+0.6
1,231,959	+				+0.7
1,231,959	+				+0.2
1,231,964	+				+0.1
1,231,967	-				+0.0
1,231,967	-				+0.0
1,232,104	+		Atu1242	0.11	-0.6
1,232,104	+		Atu1242	0.11	-0.0
1,232,104	+		Atu1242	0.11	-0.5
1,232,104	+		Atu1242	0.11	+0.8
1,232,104	+		Atu1242	0.11	-1.3
1,232,112	-		Atu1242	0.12	+2.2
1,232,112	-		Atu1242	0.12	+1.2
1,232,112	-		Atu1242	0.12	-0.8
1,232,112	-		Atu1242	0.12	-0.1
1,232,112	-		Atu1242	0.12	-0.6
1,232,278	-		Atu1242	0.27	-1.0
1,232,295	-		Atu1242	0.28	-1.2
1,232,370	+		Atu1242	0.35	-0.2
1,232,652	-		Atu1242	0.60	-0.6
1,232,653	+		Atu1242	0.60	+0.1
1,232,738	-		Atu1242	0.68	-0.3