Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0682 and Atu0683 are separated by 75 nucleotides Atu0683 and Atu0684 are separated by 369 nucleotides Atu0684 and Atu0685 are separated by 57 nucleotides
Atu0682: Atu0682 - GroEL chaperonin, at 676,328 to 677,962
Atu0682
Atu0683: Atu0683 - co-chaperonin GroES, at 678,038 to 678,334
Atu0683
Atu0684: Atu0684 - hypothetical protein, at 678,704 to 679,552
Atu0684
Atu0685: Atu0685 - riboflavin biosynthesis bifunctional protein, at 679,610 to 680,590
Atu0685
Position (kb) 678
679
680 Strain fitness (log2 ratio) -1
0
1
2 at 678.529 kb on - strand at 678.700 kb on + strand at 678.745 kb on + strand at 679.182 kb on + strand, within Atu0684 at 679.219 kb on + strand, within Atu0684 at 679.311 kb on + strand, within Atu0684 at 679.321 kb on + strand, within Atu0684 at 679.321 kb on + strand, within Atu0684 at 679.390 kb on + strand, within Atu0684 at 679.396 kb on + strand, within Atu0684 at 679.398 kb on - strand, within Atu0684 at 679.421 kb on - strand, within Atu0684 at 679.513 kb on + strand at 679.607 kb on + strand at 680.535 kb on - strand at 680.535 kb on - strand at 680.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 678,529 - -0.1 678,700 + +0.2 678,745 + +0.3 679,182 + Atu0684 0.56 +1.3 679,219 + Atu0684 0.61 +0.2 679,311 + Atu0684 0.71 -1.1 679,321 + Atu0684 0.73 +1.3 679,321 + Atu0684 0.73 +0.6 679,390 + Atu0684 0.81 +0.4 679,396 + Atu0684 0.82 -0.3 679,398 - Atu0684 0.82 -0.3 679,421 - Atu0684 0.84 +1.3 679,513 + +2.3 679,607 + +0.2 680,535 - +0.8 680,535 - +1.3 680,547 - -0.1
Or see this region's nucleotide sequence