Experiment: Bethi_Library_OD0.05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3222 and Atu3223 are separated by 69 nucleotides Atu3223 and Atu3224 overlap by 4 nucleotides
Atu3222: Atu3222 - ribose ABC transporter substrate-binding protein, at 235,845 to 236,804
Atu3222
Atu3223: Atu3223 - ribose ABC transporter ATPase, at 236,874 to 238,397
Atu3223
Atu3224: Atu3224 - ribose ABC transporter permease, at 238,394 to 239,440
Atu3224
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 235.889 kb on - strand at 235.960 kb on + strand, within Atu3222 at 235.965 kb on + strand, within Atu3222 at 236.013 kb on - strand, within Atu3222 at 236.068 kb on + strand, within Atu3222 at 236.097 kb on - strand, within Atu3222 at 236.102 kb on - strand, within Atu3222 at 236.267 kb on + strand, within Atu3222 at 236.371 kb on - strand, within Atu3222 at 236.399 kb on + strand, within Atu3222 at 236.575 kb on - strand, within Atu3222 at 236.603 kb on + strand, within Atu3222 at 236.611 kb on - strand, within Atu3222 at 236.682 kb on + strand, within Atu3222 at 236.682 kb on + strand, within Atu3222 at 236.734 kb on + strand at 236.795 kb on + strand at 236.832 kb on - strand at 236.832 kb on - strand at 236.876 kb on + strand at 236.937 kb on + strand at 236.945 kb on - strand at 237.037 kb on + strand, within Atu3223 at 237.045 kb on - strand, within Atu3223 at 237.065 kb on - strand, within Atu3223 at 237.149 kb on - strand, within Atu3223 at 237.242 kb on + strand, within Atu3223 at 237.419 kb on + strand, within Atu3223 at 237.488 kb on + strand, within Atu3223 at 237.496 kb on - strand, within Atu3223 at 237.509 kb on + strand, within Atu3223 at 237.521 kb on + strand, within Atu3223 at 237.563 kb on + strand, within Atu3223 at 237.568 kb on + strand, within Atu3223 at 237.570 kb on + strand, within Atu3223 at 237.571 kb on - strand, within Atu3223 at 237.578 kb on - strand, within Atu3223 at 237.603 kb on + strand, within Atu3223 at 237.686 kb on - strand, within Atu3223 at 237.692 kb on + strand, within Atu3223 at 237.714 kb on - strand, within Atu3223 at 237.799 kb on - strand, within Atu3223 at 237.821 kb on + strand, within Atu3223 at 237.829 kb on - strand, within Atu3223 at 237.892 kb on + strand, within Atu3223 at 237.900 kb on - strand, within Atu3223 at 237.900 kb on - strand, within Atu3223 at 237.960 kb on + strand, within Atu3223 at 237.968 kb on - strand, within Atu3223 at 237.968 kb on - strand, within Atu3223 at 237.977 kb on - strand, within Atu3223 at 238.134 kb on - strand, within Atu3223 at 238.222 kb on - strand, within Atu3223 at 238.263 kb on + strand at 238.338 kb on - strand at 238.433 kb on + strand at 238.567 kb on + strand, within Atu3224 at 238.779 kb on + strand, within Atu3224 at 238.790 kb on + strand, within Atu3224 at 238.817 kb on + strand, within Atu3224 at 238.817 kb on + strand, within Atu3224 at 238.843 kb on - strand, within Atu3224 at 238.844 kb on - strand, within Atu3224 at 238.936 kb on + strand, within Atu3224 at 238.952 kb on - strand, within Atu3224 at 238.954 kb on - strand, within Atu3224 at 238.964 kb on - strand, within Atu3224 at 239.044 kb on + strand, within Atu3224 at 239.088 kb on + strand, within Atu3224 at 239.100 kb on - strand, within Atu3224 at 239.133 kb on - strand, within Atu3224 at 239.194 kb on - strand, within Atu3224 at 239.229 kb on - strand, within Atu3224 at 239.246 kb on - strand, within Atu3224 at 239.307 kb on - strand, within Atu3224 at 239.333 kb on - strand, within Atu3224 at 239.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bethi_Library_OD0.05 remove 235,889 - -1.3 235,960 + Atu3222 0.12 +0.9 235,965 + Atu3222 0.12 -1.3 236,013 - Atu3222 0.17 +1.1 236,068 + Atu3222 0.23 +0.3 236,097 - Atu3222 0.26 +0.3 236,102 - Atu3222 0.27 -1.4 236,267 + Atu3222 0.44 +0.0 236,371 - Atu3222 0.55 -1.1 236,399 + Atu3222 0.58 -0.1 236,575 - Atu3222 0.76 -0.3 236,603 + Atu3222 0.79 +0.1 236,611 - Atu3222 0.80 +0.6 236,682 + Atu3222 0.87 -0.5 236,682 + Atu3222 0.87 -0.5 236,734 + -0.8 236,795 + +1.3 236,832 - +0.6 236,832 - +1.3 236,876 + -0.3 236,937 + -0.7 236,945 - -0.2 237,037 + Atu3223 0.11 -0.0 237,045 - Atu3223 0.11 -0.0 237,065 - Atu3223 0.13 -0.0 237,149 - Atu3223 0.18 -0.7 237,242 + Atu3223 0.24 -1.5 237,419 + Atu3223 0.36 -0.7 237,488 + Atu3223 0.40 -1.0 237,496 - Atu3223 0.41 -0.2 237,509 + Atu3223 0.42 +1.3 237,521 + Atu3223 0.42 +2.3 237,563 + Atu3223 0.45 -0.2 237,568 + Atu3223 0.46 -0.1 237,570 + Atu3223 0.46 -0.7 237,571 - Atu3223 0.46 -0.3 237,578 - Atu3223 0.46 +0.5 237,603 + Atu3223 0.48 +0.9 237,686 - Atu3223 0.53 +0.6 237,692 + Atu3223 0.54 -0.9 237,714 - Atu3223 0.55 -0.4 237,799 - Atu3223 0.61 +0.0 237,821 + Atu3223 0.62 -0.4 237,829 - Atu3223 0.63 -0.3 237,892 + Atu3223 0.67 -0.3 237,900 - Atu3223 0.67 +0.3 237,900 - Atu3223 0.67 -0.1 237,960 + Atu3223 0.71 -1.7 237,968 - Atu3223 0.72 -0.5 237,968 - Atu3223 0.72 -0.7 237,977 - Atu3223 0.72 -0.7 238,134 - Atu3223 0.83 +1.3 238,222 - Atu3223 0.88 -0.0 238,263 + +0.7 238,338 - -0.2 238,433 + +0.8 238,567 + Atu3224 0.17 -0.0 238,779 + Atu3224 0.37 +0.6 238,790 + Atu3224 0.38 -0.8 238,817 + Atu3224 0.40 -0.0 238,817 + Atu3224 0.40 -0.0 238,843 - Atu3224 0.43 -0.4 238,844 - Atu3224 0.43 -0.1 238,936 + Atu3224 0.52 -0.0 238,952 - Atu3224 0.53 +0.2 238,954 - Atu3224 0.53 +1.1 238,964 - Atu3224 0.54 +0.2 239,044 + Atu3224 0.62 -0.1 239,088 + Atu3224 0.66 -1.5 239,100 - Atu3224 0.67 +0.4 239,133 - Atu3224 0.71 +0.3 239,194 - Atu3224 0.76 -0.8 239,229 - Atu3224 0.80 +1.3 239,246 - Atu3224 0.81 -0.5 239,307 - Atu3224 0.87 +0.0 239,333 - Atu3224 0.90 +0.1 239,368 + +0.1
Or see this region's nucleotide sequence