Strain Fitness in Agrobacterium fabrum C58 around Atu3902

Experiment: Bethi_Library_OD0.05

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bethi_Library_OD0.05
998,489	-		Atu3900	0.84	+0.3
998,521	-		Atu3900	0.86	+0.0
998,762	-				+0.3
998,902	+				-0.2
998,932	+				-0.8
998,957	+				-0.4
999,054	+				+0.6
999,081	+				-0.8
999,081	+				+0.3
999,089	-				-1.3
999,209	-		Atu3901	0.28	+0.3
999,209	-		Atu3901	0.28	+0.5
999,278	+		Atu3901	0.49	-2.3
999,350	+		Atu3901	0.70	+0.8
999,350	+		Atu3901	0.70	-0.2
999,350	+		Atu3901	0.70	-1.3
999,350	+		Atu3901	0.70	+0.3
999,363	-		Atu3901	0.74	-0.2
999,494	+				+0.5
999,501	-				+0.0
999,501	-				+0.6
999,501	-				-0.7
999,538	+				+0.1
999,594	-				-1.2
999,626	+				-0.1
999,688	+				-0.1
999,696	-				+0.4
999,696	-				+0.2
999,696	-				-0.2
999,736	+		Atu3902	0.11	+0.3
999,744	-		Atu3902	0.12	-0.3
999,744	-		Atu3902	0.12	+0.2
999,744	-		Atu3902	0.12	-0.3
999,755	-		Atu3902	0.12	+0.6
999,815	-		Atu3902	0.15	+0.2
999,849	-		Atu3902	0.16	+0.8
999,892	-		Atu3902	0.18	+0.5
999,899	+		Atu3902	0.18	+0.8
999,946	+		Atu3902	0.20	-0.5
999,998	-		Atu3902	0.22	-0.4
1,000,000	+		Atu3902	0.22	-1.9
1,000,009	+		Atu3902	0.23	+0.1
1,000,010	-		Atu3902	0.23	+0.1
1,000,015	+		Atu3902	0.23	-0.1
1,000,015	+		Atu3902	0.23	-0.3
1,000,015	+		Atu3902	0.23	-0.2
1,000,023	-		Atu3902	0.23	-0.1
1,000,023	-		Atu3902	0.23	+0.5
1,000,023	-		Atu3902	0.23	-0.6
1,000,050	-		Atu3902	0.24	-1.6
1,000,135	+		Atu3902	0.28	+1.2
1,000,469	-		Atu3902	0.41	-1.4
1,000,479	+		Atu3902	0.42	-1.0
1,000,600	+		Atu3902	0.47	-1.4
1,000,600	-		Atu3902	0.47	-0.5
1,000,614	+		Atu3902	0.47	-1.9
1,000,614	+		Atu3902	0.47	+0.2
1,000,668	+		Atu3902	0.50	-0.3
1,000,668	+		Atu3902	0.50	+1.2
1,000,711	-		Atu3902	0.51	-0.1
1,000,772	+		Atu3902	0.54	+0.3
1,000,806	+		Atu3902	0.55	+0.0
1,000,946	+		Atu3902	0.61	-0.1
1,000,960	-		Atu3902	0.61	-0.4
1,001,001	-		Atu3902	0.63	-0.8
1,001,066	+		Atu3902	0.66	-0.3
1,001,074	-		Atu3902	0.66	-0.6
1,001,082	-		Atu3902	0.66	+0.3
1,001,126	+		Atu3902	0.68	-0.3
1,001,220	-		Atu3902	0.72	+3.2
1,001,251	+		Atu3902	0.73	-1.1
1,001,251	+		Atu3902	0.73	-0.3
1,001,251	+		Atu3902	0.73	-0.9
1,001,252	-		Atu3902	0.73	+0.1
1,001,278	+		Atu3902	0.74	+0.2
1,001,284	+		Atu3902	0.75	+0.6
1,001,286	-		Atu3902	0.75	-0.1
1,001,297	+		Atu3902	0.75	-0.0
1,001,404	-		Atu3902	0.80	-0.4
1,001,477	-		Atu3902	0.83	+0.1
1,001,477	-		Atu3902	0.83	+0.2
1,001,477	-		Atu3902	0.83	-0.1
1,001,565	-		Atu3902	0.86	-0.1
1,001,594	+		Atu3902	0.87	-0.9
1,001,606	-		Atu3902	0.88	-0.5
1,001,606	-		Atu3902	0.88	+0.4
1,001,697	+				-0.1
1,001,729	+				+0.1
1,001,737	-				-0.8
1,001,792	+				-0.5
1,001,797	+				+1.6
1,001,979	-				+0.1
1,001,984	-				-0.3
1,002,032	+		Atu3903	0.15	+0.5
1,002,040	-		Atu3903	0.16	-0.2
1,002,092	+		Atu3903	0.23	-0.1
1,002,120	-		Atu3903	0.26	+0.5
1,002,120	-		Atu3903	0.26	+0.5
1,002,120	-		Atu3903	0.26	-0.4
1,002,130	-		Atu3903	0.28	-0.0
1,002,135	+		Atu3903	0.28	-0.4
1,002,251	+		Atu3903	0.43	+0.4
1,002,282	-		Atu3903	0.47	-0.8
1,002,303	+		Atu3903	0.49	-1.1
1,002,336	-		Atu3903	0.54	-0.1
1,002,342	-		Atu3903	0.54	+0.2
1,002,369	+		Atu3903	0.58	-0.7
1,002,402	-		Atu3903	0.62	+0.1
1,002,473	+		Atu3903	0.71	-0.1
1,002,511	+		Atu3903	0.75	-0.5
1,002,522	+		Atu3903	0.77	-0.2
1,002,558	-		Atu3903	0.81	+0.4
1,002,571	-		Atu3903	0.83	+0.8
1,002,622	+		Atu3903	0.89	-0.4
1,002,638	-				+0.6
1,002,707	-				-0.5
1,002,756	-				-0.2
1,002,781	-				+0.2
1,002,838	-		Atu3904	0.13	-0.1